Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:45446112-46236121

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180 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Dscaml1 9 45427433 to 45753713 326280 + protein coding gene DS cell adhesion molecule like 1
Tssr84803 9 45476336 to 45476341 5 + TSS region transcription start site region 84803
Tssr84804 9 45500344 to 45500356 12 + TSS region transcription start site region 84804
Tssr89264 9 45545417 to 45545418 1 - TSS region transcription start site region 89264
Tssr84805 9 45595679 to 45595725 46 + TSS region transcription start site region 84805
Tssr84806 9 45597571 to 45597614 43 + TSS region transcription start site region 84806
D9Mit192 9 45619151 to 45619287 136 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 192
Gm22069 9 45634706 to 45634812 106 - snRNA gene predicted gene, 22069
Cpgi21693 9 45672580 to 45672937 357 CpG island CpG island 21693
Tssr84807 9 45742573 to 45742585 12 + TSS region transcription start site region 84807
Cep164 9 45766946 to 45828686 61740 - protein coding gene centrosomal protein 164
Cpgi21694 9 45767984 to 45768780 796 CpG island CpG island 21694
Tssr89265 9 45779609 to 45779636 27 - TSS region transcription start site region 89265
Tssr89266 9 45787651 to 45787666 15 - TSS region transcription start site region 89266
Tssr89267 9 45787673 to 45787720 47 - TSS region transcription start site region 89267
2610028D06Rik 9 45797348 to 45799060 1712 - unclassified gene RIKEN cDNA 2610028D06 gene
Tssr89268 9 45827281 to 45827309 28 - TSS region transcription start site region 89268
Cpgi21695 9 45828137 to 45828767 630 CpG island CpG island 21695
Tssr89269 9 45828590 to 45828604 14 - TSS region transcription start site region 89269
Tssr89270 9 45828618 to 45828680 62 - TSS region transcription start site region 89270
Tssr89271 9 45828709 to 45828720 11 - TSS region transcription start site region 89271
Gm7286 9 45835929 to 45836935 1006 - pseudogene predicted gene 7286
Bace1 9 45838545 to 45862484 23939 + protein coding gene beta-site APP cleaving enzyme 1
Tssr84808 9 45838572 to 45838592 20 + TSS region transcription start site region 84808
Cpgi21696 9 45838573 to 45839276 703 CpG island CpG island 21696
Tssr84809 9 45839881 to 45839896 15 + TSS region transcription start site region 84809
Tssr84810 9 45839942 to 45839954 12 + TSS region transcription start site region 84810
Tssr84811 9 45841112 to 45841121 9 + TSS region transcription start site region 84811
Tssr84812 9 45852704 to 45852718 14 + TSS region transcription start site region 84812
Tssr84813 9 45852740 to 45852756 16 + TSS region transcription start site region 84813
Gm16536 9 45856769 to 45858357 1588 - antisense lncRNA gene predicted gene 16536
Gm49338 9 45858604 to 45860682 2078 - unclassified gene predicted gene, 49338
Tssr84814 9 45858624 to 45858630 6 + TSS region transcription start site region 84814
Rnf214 9 45863425 to 45906911 43486 - protein coding gene ring finger protein 214
Tssr2848 9 45868890 to 45868895 5 + TSS region transcription start site region 2848
Gm24646 9 45879550 to 45879648 98 - snRNA gene predicted gene, 24646
Tssr89272 9 45900259 to 45900263 4 - TSS region transcription start site region 89272
Cpgi21697 9 45905701 to 45907374 1673 CpG island CpG island 21697
Tssr89273 9 45906369 to 45906437 68 - TSS region transcription start site region 89273
Pcsk7 9 45906497 to 45929726 23229 + protein coding gene proprotein convertase subtilisin/kexin type 7
Tssr84815 9 45906513 to 45906552 39 + TSS region transcription start site region 84815
Tssr89274 9 45906837 to 45906894 57 - TSS region transcription start site region 89274
Tssr89275 9 45906898 to 45906921 23 - TSS region transcription start site region 89275
Tssr84816 9 45906925 to 45907013 88 + TSS region transcription start site region 84816
Tssr89276 9 45907585 to 45907589 4 - TSS region transcription start site region 89276
Tagln 9 45929628 to 45936058 6430 - protein coding gene transgelin
Gm48529 9 45930112 to 45933738 3626 + antisense lncRNA gene predicted gene, 48529
Tssr84817 9 45930356 to 45930367 11 + TSS region transcription start site region 84817
Tssr89277 9 45930388 to 45930410 22 - TSS region transcription start site region 89277
Tssr89278 9 45930458 to 45930471 13 - TSS region transcription start site region 89278
Tssr89279 9 45935887 to 45935903 16 - TSS region transcription start site region 89279
Tssr89280 9 45936049 to 45936106 57 - TSS region transcription start site region 89280
Sidt2 9 45937857 to 45955249 17392 - protein coding gene SID1 transmembrane family, member 2
Mir7087 9 45939521 to 45939590 69 - miRNA gene microRNA 7087
Tssr2849 9 45944840 to 45944848 8 - TSS region transcription start site region 2849
Tssr2850 9 45944867 to 45944892 25 - TSS region transcription start site region 2850
Tssr89281 9 45945047 to 45945057 10 - TSS region transcription start site region 89281
Tssr89282 9 45945090 to 45945123 33 - TSS region transcription start site region 89282
Tssr89283 9 45945163 to 45945193 30 - TSS region transcription start site region 89283
Tssr84818 9 45945319 to 45945350 31 + TSS region transcription start site region 84818
Tssr89284 9 45945627 to 45945631 4 - TSS region transcription start site region 89284
Tssr2851 9 45945786 to 45945803 17 - TSS region transcription start site region 2851
Tssr89285 9 45945919 to 45945931 12 - TSS region transcription start site region 89285
Tssr89286 9 45945941 to 45945960 19 - TSS region transcription start site region 89286
Tssr89287 9 45945977 to 45945988 11 - TSS region transcription start site region 89287
Tssr89288 9 45946001 to 45946011 10 - TSS region transcription start site region 89288
Tssr89289 9 45946557 to 45946565 8 - TSS region transcription start site region 89289
Tssr89290 9 45946569 to 45946597 28 - TSS region transcription start site region 89290
Tssr89291 9 45946967 to 45946978 11 - TSS region transcription start site region 89291
Tssr89292 9 45952859 to 45952884 25 - TSS region transcription start site region 89292
Tssr89293 9 45953673 to 45953684 11 - TSS region transcription start site region 89293
A830035O19Rik 9 45954101 to 45955998 1897 + antisense lncRNA gene RIKEN cDNA A830035O19 gene
Cpgi21698 9 45954433 to 45955657 1224 CpG island CpG island 21698
Tssr89294 9 45954966 to 45954987 21 - TSS region transcription start site region 89294
Tssr89295 9 45955170 to 45955186 16 - TSS region transcription start site region 89295
Tssr89296 9 45955196 to 45955212 16 - TSS region transcription start site region 89296
Tssr89297 9 45955226 to 45955250 24 - TSS region transcription start site region 89297
Tssr89298 9 45955253 to 45955278 25 - TSS region transcription start site region 89298
Tssr89299 9 45955279 to 45955291 12 - TSS region transcription start site region 89299
Tssr84819 9 45955327 to 45955346 19 + TSS region transcription start site region 84819
D9Mit287 9 45956593 to 45956694 101 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 287
Pafah1b2 9 45965311 to 46012685 47374 - protein coding gene platelet-activating factor acetylhydrolase, isoform 1b, subunit 2
Cpgi21699 9 45984161 to 45985164 1003 CpG island CpG island 21699
Tssr89300 9 45984377 to 45984381 4 - TSS region transcription start site region 89300
Tssr89301 9 45984519 to 45984524 5 - TSS region transcription start site region 89301
Tssr89302 9 45984528 to 45984561 33 - TSS region transcription start site region 89302
Tssr89303 9 45984562 to 45984586 24 - TSS region transcription start site region 89303
Tssr89304 9 45984777 to 45984808 31 - TSS region transcription start site region 89304
Tssr89305 9 45984816 to 45984855 39 - TSS region transcription start site region 89305
Tssr84820 9 45984925 to 45984943 18 + TSS region transcription start site region 84820
Tssr89306 9 45985365 to 45985415 50 - TSS region transcription start site region 89306
Tssr84821 9 46009261 to 46009269 8 + TSS region transcription start site region 84821
Tssr89307 9 46009780 to 46009782 2 - TSS region transcription start site region 89307
Cpgi21700 9 46012148 to 46013605 1457 CpG island CpG island 21700
Tssr89308 9 46012611 to 46012693 82 - TSS region transcription start site region 89308
Tssr84822 9 46012810 to 46012821 11 + TSS region transcription start site region 84822
Sik3 9 46012820 to 46224194 211374 + protein coding gene SIK family kinase 3
Tssr84823 9 46012822 to 46012860 38 + TSS region transcription start site region 84823
Tssr84824 9 46022446 to 46022457 11 + TSS region transcription start site region 84824
Tssr89309 9 46031227 to 46031228 1 - TSS region transcription start site region 89309
Tssr84825 9 46047966 to 46047970 4 + TSS region transcription start site region 84825
Tssr2852 9 46049815 to 46049829 14 + TSS region transcription start site region 2852
Tssr84826 9 46050112 to 46050116 4 + TSS region transcription start site region 84826
Tssr2853 9 46053416 to 46053427 11 + TSS region transcription start site region 2853
Gm46110 9 46054070 to 46072810 18740 - lncRNA gene predicted gene, 46110
Tssr84827 9 46083871 to 46083898 27 + TSS region transcription start site region 84827
Tssr89310 9 46112325 to 46112354 29 - TSS region transcription start site region 89310
D9Ertd26e 9 46115851 to 46116053 202 DNA segment DNA segment, Chr 9, ERATO Doi 26, expressed
Tssr84828 9 46119018 to 46119022 4 + TSS region transcription start site region 84828
Tssr84829 9 46127233 to 46127237 4 + TSS region transcription start site region 84829
Tssr89311 9 46154590 to 46154594 4 - TSS region transcription start site region 89311
Gm18915 9 46161026 to 46161946 920 + pseudogene predicted gene, 18915
Tssr84830 9 46173194 to 46173236 42 + TSS region transcription start site region 84830
Tssr89312 9 46175475 to 46175492 17 - TSS region transcription start site region 89312
Tssr2854 9 46197082 to 46197094 12 + TSS region transcription start site region 2854
Tssr84831 9 46207607 to 46207622 15 + TSS region transcription start site region 84831
Tssr84832 9 46207937 to 46207946 9 + TSS region transcription start site region 84832
Tssr84833 9 46208520 to 46208524 4 + TSS region transcription start site region 84833
Tssr84834 9 46210596 to 46210607 11 + TSS region transcription start site region 84834
Tssr84835 9 46210708 to 46210725 17 + TSS region transcription start site region 84835
Tssr84836 9 46215962 to 46215972 10 + TSS region transcription start site region 84836
Tssr84837 9 46216123 to 46216132 9 + TSS region transcription start site region 84837
D9Jpk1 9 46218649 to 46218755 106 DNA segment DNA segment, Chr 9, Japan, Kominami 1
Tssr84838 9 46225490 to 46225517 27 + TSS region transcription start site region 84838
Tssr84839 9 46228347 to 46228374 27 + TSS region transcription start site region 84839
Apoa1 9 46228630 to 46230469 1839 + protein coding gene apolipoprotein A-I
Tssr84840 9 46228701 to 46228714 13 + TSS region transcription start site region 84840
Tssr84841 9 46228833 to 46228844 11 + TSS region transcription start site region 84841
Tssr84842 9 46228928 to 46228946 18 + TSS region transcription start site region 84842
Tssr84843 9 46228951 to 46228980 29 + TSS region transcription start site region 84843
Tssr84844 9 46229110 to 46229154 44 + TSS region transcription start site region 84844
Tssr84845 9 46229162 to 46229191 29 + TSS region transcription start site region 84845
Tssr84846 9 46229201 to 46229246 45 + TSS region transcription start site region 84846
Tssr84847 9 46229822 to 46229908 86 + TSS region transcription start site region 84847
Tssr84848 9 46229909 to 46229986 77 + TSS region transcription start site region 84848
Tssr89313 9 46229934 to 46229975 41 - TSS region transcription start site region 89313
Cpgi21701 9 46229946 to 46230505 559 CpG island CpG island 21701
Tssr89314 9 46229994 to 46230003 9 - TSS region transcription start site region 89314
Tssr84849 9 46230001 to 46230022 21 + TSS region transcription start site region 84849
Tssr89315 9 46230008 to 46230026 18 - TSS region transcription start site region 89315
Tssr89316 9 46230036 to 46230046 10 - TSS region transcription start site region 89316
Tssr84850 9 46230041 to 46230064 23 + TSS region transcription start site region 84850
Tssr89317 9 46230048 to 46230055 7 - TSS region transcription start site region 89317
Tssr89318 9 46230070 to 46230079 9 - TSS region transcription start site region 89318
Tssr89319 9 46230084 to 46230089 5 - TSS region transcription start site region 89319
Tssr84851 9 46230085 to 46230099 14 + TSS region transcription start site region 84851
Tssr89320 9 46230093 to 46230102 9 - TSS region transcription start site region 89320
Tssr84852 9 46230104 to 46230196 92 + TSS region transcription start site region 84852
Tssr89321 9 46230115 to 46230127 12 - TSS region transcription start site region 89321
Tssr89322 9 46230161 to 46230210 49 - TSS region transcription start site region 89322
Tssr84853 9 46230202 to 46230230 28 + TSS region transcription start site region 84853
Tssr89323 9 46230226 to 46230262 36 - TSS region transcription start site region 89323
Tssr84854 9 46230232 to 46230243 11 + TSS region transcription start site region 84854
Tssr84855 9 46230251 to 46230263 12 + TSS region transcription start site region 84855
Tssr84856 9 46230267 to 46230274 7 + TSS region transcription start site region 84856
Tssr89324 9 46230276 to 46230290 14 - TSS region transcription start site region 89324
Tssr89325 9 46230300 to 46230315 15 - TSS region transcription start site region 89325
Tssr89326 9 46230340 to 46230349 9 - TSS region transcription start site region 89326
Tssr84857 9 46230385 to 46230396 11 + TSS region transcription start site region 84857
Tssr84858 9 46230404 to 46230433 29 + TSS region transcription start site region 84858
Tssr89327 9 46230461 to 46230463 2 - TSS region transcription start site region 89327
Apoc3 9 46233050 to 46235636 2586 - protein coding gene apolipoprotein C-III
Tssr89328 9 46233099 to 46233123 24 - TSS region transcription start site region 89328
Tssr84859 9 46233132 to 46233189 57 + TSS region transcription start site region 84859
Tssr89329 9 46233170 to 46233203 33 - TSS region transcription start site region 89329
Tssr89330 9 46233216 to 46233232 16 - TSS region transcription start site region 89330
Tssr89331 9 46233249 to 46233278 29 - TSS region transcription start site region 89331
Tssr84860 9 46233271 to 46233297 26 + TSS region transcription start site region 84860
Tssr84861 9 46233317 to 46233326 9 + TSS region transcription start site region 84861
Tssr89332 9 46233324 to 46233351 27 - TSS region transcription start site region 89332
D9Mit93 9 46233355 to 46233567 212 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 93
Tssr84862 9 46234412 to 46234437 25 + TSS region transcription start site region 84862
Tssr89333 9 46234452 to 46234471 19 - TSS region transcription start site region 89333
Tssr89334 9 46234473 to 46234478 5 - TSS region transcription start site region 89334
Tssr89335 9 46234514 to 46234533 19 - TSS region transcription start site region 89335
Tssr89336 9 46234687 to 46234743 56 - TSS region transcription start site region 89336
Tssr89337 9 46235289 to 46235306 17 - TSS region transcription start site region 89337
Tssr89338 9 46235631 to 46235665 34 - TSS region transcription start site region 89338
Tssr89339 9 46235682 to 46235693 11 - TSS region transcription start site region 89339
Tssr89340 9 46235756 to 46235789 33 - TSS region transcription start site region 89340