Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:45307433-45873713

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88 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lfibq8 9 41490866 to 45432445 3941579 QTL liver fibrosis QTL 8
D9Mit69 9 45308095 to 45308273 178 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 69
Lncbate3 9 45318266 to 45322079 3813 - antisense lncRNA gene brown adipose tissue enriched long noncoding RNA 3
Tssr84762 9 45318982 to 45319019 37 + TSS region transcription start site region 84762
Tssr84763 9 45319021 to 45319062 41 + TSS region transcription start site region 84763
Tssr84764 9 45319072 to 45319086 14 + TSS region transcription start site region 84764
Tmprss13 9 45319100 to 45347581 28481 + protein coding gene transmembrane protease, serine 13
Tssr84765 9 45328494 to 45328508 14 + TSS region transcription start site region 84765
Tssr84766 9 45346804 to 45346807 3 + TSS region transcription start site region 84766
Tssr84767 9 45370003 to 45370019 16 + TSS region transcription start site region 84767
Tssr84768 9 45370092 to 45370109 17 + TSS region transcription start site region 84768
Cpgi21690 9 45370118 to 45371077 959 CpG island CpG island 21690
Fxyd6 9 45370185 to 45396159 25974 + protein coding gene FXYD domain-containing ion transport regulator 6
Tssr84769 9 45370199 to 45370208 9 + TSS region transcription start site region 84769
Tssr84770 9 45370212 to 45370282 70 + TSS region transcription start site region 84770
Tssr84771 9 45370397 to 45370463 66 + TSS region transcription start site region 84771
Tssr84772 9 45371638 to 45371655 17 + TSS region transcription start site region 84772
Tssr84773 9 45371706 to 45371731 25 + TSS region transcription start site region 84773
Tssr84774 9 45379897 to 45379903 6 + TSS region transcription start site region 84774
Tssr84775 9 45389877 to 45389882 5 + TSS region transcription start site region 84775
Tssr84776 9 45389891 to 45389906 15 + TSS region transcription start site region 84776
Tssr84777 9 45389918 to 45389926 8 + TSS region transcription start site region 84777
Tssr84778 9 45390747 to 45390763 16 + TSS region transcription start site region 84778
Tssr84779 9 45390793 to 45390808 15 + TSS region transcription start site region 84779
Tssr84780 9 45395085 to 45395121 36 + TSS region transcription start site region 84780
Tssr84781 9 45399656 to 45399669 13 + TSS region transcription start site region 84781
Tssr84782 9 45399702 to 45399718 16 + TSS region transcription start site region 84782
Fxyd2 9 45399709 to 45410278 10569 + protein coding gene FXYD domain-containing ion transport regulator 2
Tssr84783 9 45402565 to 45402574 9 + TSS region transcription start site region 84783
Tssr84784 9 45402615 to 45402626 11 + TSS region transcription start site region 84784
Tssr84785 9 45403142 to 45403158 16 + TSS region transcription start site region 84785
Tssr84786 9 45403174 to 45403189 15 + TSS region transcription start site region 84786
Tssr84787 9 45403196 to 45403210 14 + TSS region transcription start site region 84787
Tssr84788 9 45403227 to 45403241 14 + TSS region transcription start site region 84788
Tssr84789 9 45403253 to 45403268 15 + TSS region transcription start site region 84789
Tssr84790 9 45405935 to 45406009 74 + TSS region transcription start site region 84790
Tssr84791 9 45406066 to 45406109 43 + TSS region transcription start site region 84791
Tssr84792 9 45406114 to 45406118 4 + TSS region transcription start site region 84792
Tssr84793 9 45407119 to 45407129 10 + TSS region transcription start site region 84793
Cpgi21691 9 45408136 to 45408350 214 CpG island CpG island 21691
Tssr84794 9 45408268 to 45408310 42 + TSS region transcription start site region 84794
Tssr84795 9 45409984 to 45410068 84 + TSS region transcription start site region 84795
Tssr84796 9 45410075 to 45410086 11 + TSS region transcription start site region 84796
Tssr89263 9 45410075 to 45410099 24 - TSS region transcription start site region 89263
Tssr84797 9 45410104 to 45410125 21 + TSS region transcription start site region 84797
Tssr84798 9 45410128 to 45410169 41 + TSS region transcription start site region 84798
Gm48135 9 45413473 to 45414090 617 - unclassified gene predicted gene, 48135
4833428L15Rik 9 45416626 to 45431232 14606 - antisense lncRNA gene RIKEN cDNA 4833428L15 gene
Tssr84799 9 45426630 to 45426648 18 + TSS region transcription start site region 84799
Dscaml1 9 45427433 to 45753713 326280 + protein coding gene DS cell adhesion molecule like 1
Cpgi21692 9 45430000 to 45431642 1642 CpG island CpG island 21692
Tssr84800 9 45430316 to 45430379 63 + TSS region transcription start site region 84800
Tssr84801 9 45431329 to 45431339 10 + TSS region transcription start site region 84801
Tssr84802 9 45431357 to 45431366 9 + TSS region transcription start site region 84802
Tssr84803 9 45476336 to 45476341 5 + TSS region transcription start site region 84803
Tssr84804 9 45500344 to 45500356 12 + TSS region transcription start site region 84804
Tssr89264 9 45545417 to 45545418 1 - TSS region transcription start site region 89264
Tssr84805 9 45595679 to 45595725 46 + TSS region transcription start site region 84805
Tssr84806 9 45597571 to 45597614 43 + TSS region transcription start site region 84806
D9Mit192 9 45619151 to 45619287 136 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 192
Gm22069 9 45634706 to 45634812 106 - snRNA gene predicted gene, 22069
Cpgi21693 9 45672580 to 45672937 357 CpG island CpG island 21693
Tssr84807 9 45742573 to 45742585 12 + TSS region transcription start site region 84807
Cep164 9 45766946 to 45828686 61740 - protein coding gene centrosomal protein 164
Cpgi21694 9 45767984 to 45768780 796 CpG island CpG island 21694
Tssr89265 9 45779609 to 45779636 27 - TSS region transcription start site region 89265
Tssr89266 9 45787651 to 45787666 15 - TSS region transcription start site region 89266
Tssr89267 9 45787673 to 45787720 47 - TSS region transcription start site region 89267
2610028D06Rik 9 45797348 to 45799060 1712 - unclassified gene RIKEN cDNA 2610028D06 gene
Tssr89268 9 45827281 to 45827309 28 - TSS region transcription start site region 89268
Cpgi21695 9 45828137 to 45828767 630 CpG island CpG island 21695
Tssr89269 9 45828590 to 45828604 14 - TSS region transcription start site region 89269
Tssr89270 9 45828618 to 45828680 62 - TSS region transcription start site region 89270
Tssr89271 9 45828709 to 45828720 11 - TSS region transcription start site region 89271
Gm7286 9 45835929 to 45836935 1006 - pseudogene predicted gene 7286
Bace1 9 45838545 to 45862484 23939 + protein coding gene beta-site APP cleaving enzyme 1
Tssr84808 9 45838572 to 45838592 20 + TSS region transcription start site region 84808
Cpgi21696 9 45838573 to 45839276 703 CpG island CpG island 21696
Tssr84809 9 45839881 to 45839896 15 + TSS region transcription start site region 84809
Tssr84810 9 45839942 to 45839954 12 + TSS region transcription start site region 84810
Tssr84811 9 45841112 to 45841121 9 + TSS region transcription start site region 84811
Tssr84812 9 45852704 to 45852718 14 + TSS region transcription start site region 84812
Tssr84813 9 45852740 to 45852756 16 + TSS region transcription start site region 84813
Gm16536 9 45856769 to 45858357 1588 - antisense lncRNA gene predicted gene 16536
Gm49338 9 45858604 to 45860682 2078 - unclassified gene predicted gene, 49338
Tssr84814 9 45858624 to 45858630 6 + TSS region transcription start site region 84814
Rnf214 9 45863425 to 45906911 43486 - protein coding gene ring finger protein 214
Tssr2848 9 45868890 to 45868895 5 + TSS region transcription start site region 2848