Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:44151465-44351491

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87 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pid2 9 37242066 to 44340026 7097960 QTL prion incubation determinant 2
Cbl 9 44145040 to 44234046 89006 - protein coding gene Casitas B-lineage lymphoma
Tssr89115 9 44163420 to 44163430 10 - TSS region transcription start site region 89115
5830462O15Rik 9 44179047 to 44180701 1654 - unclassified gene RIKEN cDNA 5830462O15 gene
Gm47255 9 44180675 to 44181161 486 + pseudogene predicted gene, 47255
Tssr89116 9 44185398 to 44185401 3 - TSS region transcription start site region 89116
D9Ertd334e 9 44191734 to 44191949 215 DNA segment DNA segment, Chr 9, ERATO Doi 334, expressed
Tssr89117 9 44196116 to 44196120 4 - TSS region transcription start site region 89117
Tssr89118 9 44196493 to 44196515 22 - TSS region transcription start site region 89118
Tssr89119 9 44196523 to 44196556 33 - TSS region transcription start site region 89119
Cpgi21644 9 44233331 to 44234497 1166 CpG island CpG island 21644
Tssr89120 9 44233334 to 44233336 2 - TSS region transcription start site region 89120
Tssr89121 9 44233475 to 44233527 52 - TSS region transcription start site region 89121
Tssr89122 9 44233901 to 44233912 11 - TSS region transcription start site region 89122
Tssr89123 9 44233927 to 44233967 40 - TSS region transcription start site region 89123
Tssr89124 9 44233983 to 44234003 20 - TSS region transcription start site region 89124
Tssr89125 9 44234014 to 44234017 3 - TSS region transcription start site region 89125
Tssr89126 9 44234155 to 44234164 9 - TSS region transcription start site region 89126
Tssr84627 9 44234361 to 44234374 13 + TSS region transcription start site region 84627
Tssr89127 9 44236887 to 44236907 20 - TSS region transcription start site region 89127
Tssr84628 9 44240668 to 44240693 25 + TSS region transcription start site region 84628
Ccdc153 9 44240676 to 44247306 6630 + protein coding gene coiled-coil domain containing 153
Tssr84629 9 44240707 to 44240717 10 + TSS region transcription start site region 84629
Tssr84630 9 44240732 to 44240743 11 + TSS region transcription start site region 84630
Pdzd3 9 44247312 to 44251464 4152 - protein coding gene PDZ domain containing 3
Tssr89128 9 44251465 to 44251491 26 - TSS region transcription start site region 89128
Nlrx1 9 44252717 to 44268599 15882 - protein coding gene NLR family member X1
Tssr84631 9 44255034 to 44255057 23 + TSS region transcription start site region 84631
Gm10686 9 44255047 to 44258293 3246 + unclassified gene predicted gene 10686
Tssr89129 9 44256925 to 44256942 17 - TSS region transcription start site region 89129
Cpgi21645 9 44263913 to 44264241 328 CpG island CpG island 21645
Cpgi21646 9 44267551 to 44268387 836 CpG island CpG island 21646
Tssr89130 9 44268051 to 44268111 60 - TSS region transcription start site region 89130
Tssr89131 9 44268156 to 44268167 11 - TSS region transcription start site region 89131
Tssr89132 9 44268182 to 44268229 47 - TSS region transcription start site region 89132
Tssr2840 9 44268461 to 44268476 15 - TSS region transcription start site region 2840
Abcg4 9 44273188 to 44288615 15427 - protein coding gene ATP binding cassette subfamily G member 4
Tssr2841 9 44275545 to 44275552 7 - TSS region transcription start site region 2841
Tssr89133 9 44279339 to 44279351 12 - TSS region transcription start site region 89133
Cpgi21647 9 44287158 to 44288469 1311 CpG island CpG island 21647
Tssr89134 9 44288041 to 44288079 38 - TSS region transcription start site region 89134
Tssr89135 9 44288131 to 44288153 22 - TSS region transcription start site region 89135
Tssr89136 9 44288312 to 44288323 11 - TSS region transcription start site region 89136
Tssr89137 9 44288332 to 44288409 77 - TSS region transcription start site region 89137
Tssr89138 9 44288535 to 44288601 66 - TSS region transcription start site region 89138
Gm48604 9 44290044 to 44292463 2419 - lincRNA gene predicted gene, 48604
Hinfp 9 44292440 to 44305671 13231 - protein coding gene histone H4 transcription factor
Cpgi21648 9 44305221 to 44306074 853 CpG island CpG island 21648
Tssr89139 9 44305595 to 44305688 93 - TSS region transcription start site region 89139
C2cd2l 9 44309237 to 44320282 11045 - protein coding gene C2 calcium-dependent domain containing 2-like
Cpgi21649 9 44319455 to 44320516 1061 CpG island CpG island 21649
Tssr89140 9 44320229 to 44320290 61 - TSS region transcription start site region 89140
Tssr89141 9 44320361 to 44320380 19 - TSS region transcription start site region 89141
Dpagt1 9 44326017 to 44333606 7589 + protein coding gene dolichyl-phosphate (UDP-N-acetylglucosamine) acetylglucosaminephosphotransferase 1 (GlcNAc-1-P transferase)
Cpgi21650 9 44326386 to 44327312 926 CpG island CpG island 21650
Tssr84632 9 44326532 to 44326576 44 + TSS region transcription start site region 84632
Tssr84633 9 44326804 to 44326896 92 + TSS region transcription start site region 84633
Tssr84634 9 44326988 to 44326999 11 + TSS region transcription start site region 84634
Tssr84635 9 44327027 to 44327038 11 + TSS region transcription start site region 84635
Tssr84636 9 44327041 to 44327058 17 + TSS region transcription start site region 84636
Tssr84637 9 44327524 to 44327540 16 + TSS region transcription start site region 84637
Tssr84638 9 44327544 to 44327560 16 + TSS region transcription start site region 84638
Tssr84639 9 44327576 to 44327603 27 + TSS region transcription start site region 84639
Tssr84640 9 44327606 to 44327621 15 + TSS region transcription start site region 84640
Tssr84641 9 44329055 to 44329068 13 + TSS region transcription start site region 84641
Gm48853 9 44332684 to 44334386 1702 - antisense lncRNA gene predicted gene, 48853
Cpgi21651 9 44334403 to 44335892 1489 CpG island CpG island 21651
Tssr84642 9 44334685 to 44334704 19 + TSS region transcription start site region 84642
H2afx 9 44334715 to 44336077 1362 + protein coding gene H2A histone family, member X
Gm44335 9 44334965 to 44335105 140 - miRNA gene predicted gene, 44335
Tssr84643 9 44335192 to 44335220 28 + TSS region transcription start site region 84643
Tssr84644 9 44335239 to 44335266 27 + TSS region transcription start site region 84644
Tssr84645 9 44335289 to 44335372 83 + TSS region transcription start site region 84645
Tssr84646 9 44335595 to 44335609 14 + TSS region transcription start site region 84646
Tssr84647 9 44336292 to 44336296 4 + TSS region transcription start site region 84647
Hmbs 9 44336348 to 44344228 7880 - protein coding gene hydroxymethylbilane synthase
Tssr89142 9 44338272 to 44338281 9 - TSS region transcription start site region 89142
D9Mit25.2 9 44339762 to 44339903 141 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 25.2
D9Mit25 9 44339897 to 44340026 129 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 25
Adip20 9 44339897 to 44340026 129 QTL adiposity 20
D9Mit25.1 9 44340035 to 44340206 171 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 25.1
Tssr89143 9 44342296 to 44342312 16 - TSS region transcription start site region 89143
Tssr89144 9 44342332 to 44342344 12 - TSS region transcription start site region 89144
Cpgi21652 9 44343750 to 44344314 564 CpG island CpG island 21652
Tssr89145 9 44344120 to 44344132 12 - TSS region transcription start site region 89145
Tssr89146 9 44344159 to 44344203 44 - TSS region transcription start site region 89146
Vps11 9 44347881 to 44361672 13791 - protein coding gene VPS11, CORVET/HOPS core subunit