Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:44085040-44294046

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Adip20a 9 42779420 to 44142555 1363135 QTL adiposity 20a
Gm49380 9 44066327 to 44113500 47173 - protein coding gene predicted gene, 49380
Usp2 9 44067021 to 44095627 28606 + protein coding gene ubiquitin specific peptidase 2
Cpgi21639 9 44084445 to 44085621 1176 CpG island CpG island 21639
Tssr84612 9 44085029 to 44085047 18 + TSS region transcription start site region 84612
Tssr84613 9 44086201 to 44086202 1 + TSS region transcription start site region 84613
Tssr84614 9 44086206 to 44086219 13 + TSS region transcription start site region 84614
Tssr84615 9 44089094 to 44089135 41 + TSS region transcription start site region 84615
Tssr84616 9 44093865 to 44093885 20 + TSS region transcription start site region 84616
Gm38444 9 44095812 to 44099113 3301 - lncRNA gene predicted gene, 38444
Tssr84617 9 44101722 to 44101735 13 + TSS region transcription start site region 84617
Mfrp 9 44101770 to 44109187 7417 + protein coding gene membrane frizzled-related protein
Tssr84618 9 44102065 to 44102078 13 + TSS region transcription start site region 84618
Tssr84619 9 44107226 to 44107235 9 + TSS region transcription start site region 84619
C1qtnf5 9 44107245 to 44109187 1942 + protein coding gene C1q and tumor necrosis factor related protein 5
Tssr84620 9 44107268 to 44107279 11 + TSS region transcription start site region 84620
Tssr84621 9 44107286 to 44107355 69 + TSS region transcription start site region 84621
Gm20444 9 44107301 to 44108879 1578 - sense intronic lncRNA gene predicted gene 20444
Tssr84622 9 44107672 to 44107718 46 + TSS region transcription start site region 84622
Tssr84623 9 44107743 to 44107761 18 + TSS region transcription start site region 84623
Cpgi21640 9 44107813 to 44108570 757 CpG island CpG island 21640
Rnf26 9 44110781 to 44113051 2270 - protein coding gene ring finger protein 26
Gm47327 9 44110909 to 44111170 261 + unclassified gene predicted gene, 47327
Gm26737 9 44112923 to 44121960 9037 + antisense lncRNA gene predicted gene, 26737
Cpgi21641 9 44113120 to 44113879 759 CpG island CpG island 21641
Tssr89107 9 44113470 to 44113528 58 - TSS region transcription start site region 89107
Gm10687 9 44125258 to 44134485 9227 - antisense lncRNA gene predicted gene 10687
Cpgi21642 9 44129947 to 44130391 444 CpG island CpG island 21642
Tssr89108 9 44130173 to 44130178 5 - TSS region transcription start site region 89108
Cpgi21643 9 44134165 to 44135558 1393 CpG island CpG island 21643
Tssr84624 9 44134206 to 44134254 48 + TSS region transcription start site region 84624
Tssr89109 9 44134481 to 44134510 29 - TSS region transcription start site region 89109
Tssr89110 9 44134513 to 44134533 20 - TSS region transcription start site region 89110
Mcam 9 44134581 to 44142727 8146 + protein coding gene melanoma cell adhesion molecule
Tssr84625 9 44134653 to 44134670 17 + TSS region transcription start site region 84625
Tssr89111 9 44135185 to 44135210 25 - TSS region transcription start site region 89111
Tssr84626 9 44140590 to 44140609 19 + TSS region transcription start site region 84626
Tssr89112 9 44144527 to 44144548 21 - TSS region transcription start site region 89112
Tssr89113 9 44144713 to 44144733 20 - TSS region transcription start site region 89113
Cbl 9 44145040 to 44234046 89006 - protein coding gene Casitas B-lineage lymphoma
Tssr89114 9 44148243 to 44148278 35 - TSS region transcription start site region 89114
Tssr89115 9 44163420 to 44163430 10 - TSS region transcription start site region 89115
5830462O15Rik 9 44179047 to 44180701 1654 - unclassified gene RIKEN cDNA 5830462O15 gene
Gm47255 9 44180675 to 44181161 486 + pseudogene predicted gene, 47255
Tssr89116 9 44185398 to 44185401 3 - TSS region transcription start site region 89116
D9Ertd334e 9 44191734 to 44191949 215 DNA segment DNA segment, Chr 9, ERATO Doi 334, expressed
Tssr89117 9 44196116 to 44196120 4 - TSS region transcription start site region 89117
Tssr89118 9 44196493 to 44196515 22 - TSS region transcription start site region 89118
Tssr89119 9 44196523 to 44196556 33 - TSS region transcription start site region 89119
Cpgi21644 9 44233331 to 44234497 1166 CpG island CpG island 21644
Tssr89120 9 44233334 to 44233336 2 - TSS region transcription start site region 89120
Tssr89121 9 44233475 to 44233527 52 - TSS region transcription start site region 89121
Tssr89122 9 44233901 to 44233912 11 - TSS region transcription start site region 89122
Tssr89123 9 44233927 to 44233967 40 - TSS region transcription start site region 89123
Tssr89124 9 44233983 to 44234003 20 - TSS region transcription start site region 89124
Tssr89125 9 44234014 to 44234017 3 - TSS region transcription start site region 89125
Tssr89126 9 44234155 to 44234164 9 - TSS region transcription start site region 89126
Tssr84627 9 44234361 to 44234374 13 + TSS region transcription start site region 84627
Tssr89127 9 44236887 to 44236907 20 - TSS region transcription start site region 89127
Tssr84628 9 44240668 to 44240693 25 + TSS region transcription start site region 84628
Ccdc153 9 44240676 to 44247306 6630 + protein coding gene coiled-coil domain containing 153
Tssr84629 9 44240707 to 44240717 10 + TSS region transcription start site region 84629
Tssr84630 9 44240732 to 44240743 11 + TSS region transcription start site region 84630
Pdzd3 9 44247312 to 44251464 4152 - protein coding gene PDZ domain containing 3
Tssr89128 9 44251465 to 44251491 26 - TSS region transcription start site region 89128
Nlrx1 9 44252717 to 44268599 15882 - protein coding gene NLR family member X1
Tssr84631 9 44255034 to 44255057 23 + TSS region transcription start site region 84631
Gm10686 9 44255047 to 44258293 3246 + unclassified gene predicted gene 10686
Tssr89129 9 44256925 to 44256942 17 - TSS region transcription start site region 89129
Cpgi21645 9 44263913 to 44264241 328 CpG island CpG island 21645
Cpgi21646 9 44267551 to 44268387 836 CpG island CpG island 21646
Tssr89130 9 44268051 to 44268111 60 - TSS region transcription start site region 89130
Tssr89131 9 44268156 to 44268167 11 - TSS region transcription start site region 89131
Tssr89132 9 44268182 to 44268229 47 - TSS region transcription start site region 89132
Tssr2840 9 44268461 to 44268476 15 - TSS region transcription start site region 2840
Abcg4 9 44273188 to 44288615 15427 - protein coding gene ATP binding cassette subfamily G member 4
Tssr2841 9 44275545 to 44275552 7 - TSS region transcription start site region 2841
Tssr89133 9 44279339 to 44279351 12 - TSS region transcription start site region 89133
Cpgi21647 9 44287158 to 44288469 1311 CpG island CpG island 21647
Tssr89134 9 44288041 to 44288079 38 - TSS region transcription start site region 89134
Tssr89135 9 44288131 to 44288153 22 - TSS region transcription start site region 89135
Tssr89136 9 44288312 to 44288323 11 - TSS region transcription start site region 89136
Tssr89137 9 44288332 to 44288409 77 - TSS region transcription start site region 89137
Tssr89138 9 44288535 to 44288601 66 - TSS region transcription start site region 89138
Gm48604 9 44290044 to 44292463 2419 - lincRNA gene predicted gene, 48604
Hinfp 9 44292440 to 44305671 13231 - protein coding gene histone H4 transcription factor