Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:43777471-43998630

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26 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nectin1 9 43744576 to 43807461 62885 + protein coding gene nectin cell adhesion molecule 1
Gm46108 9 43773672 to 43787226 13554 - lncRNA gene predicted gene, 46108
Tssr84571 9 43794143 to 43794157 14 + TSS region transcription start site region 84571
Tssr84572 9 43796253 to 43796264 11 + TSS region transcription start site region 84572
Cpgi21632 9 43803431 to 43803909 478 CpG island CpG island 21632
Tssr84573 9 43804132 to 43804154 22 + TSS region transcription start site region 84573
Tssr84574 9 43804201 to 43804212 11 + TSS region transcription start site region 84574
Tssr84575 9 43804679 to 43804693 14 + TSS region transcription start site region 84575
D9Mit1007 9 43809795 to 43809937 142 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 1007
Gm3898 9 43829971 to 43832669 2698 + lincRNA gene predicted gene 3898
Cpgi21633 9 43864060 to 43864342 282 CpG island CpG island 21633
Tssr84576 9 43869403 to 43869405 2 + TSS region transcription start site region 84576
Cpgi21634 9 43879800 to 43880522 722 CpG island CpG island 21634
D9Mit129.1 9 43884995 to 43885104 109 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 129.1
Mtbcq9 9 43885124 to 43885255 131 QTL multiple trait body composition QTL 9
D9Mit129 9 43885124 to 43885255 131 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 129
Hdlq17 9 43885124 to 43885255 131 QTL HDL QTL 17
Stheal13 9 43885124 to 43885255 131 QTL soft tissue heal 13
Gm39322 9 43887471 to 43888630 1159 - lncRNA gene predicted gene, 39322
D9Ertd596e 9 43892064 to 43892314 250 DNA segment DNA segment, Chr 9, ERATO Doi 596, expressed
Gm23326 9 43905898 to 43906002 104 - snRNA gene predicted gene, 23326
Gm30373 9 43960966 to 43974170 13204 - lincRNA gene predicted gene, 30373
Gm10688 9 43978958 to 43979477 519 - lincRNA gene predicted gene 10688
Tssr84577 9 43993982 to 43993993 11 + TSS region transcription start site region 84577
E230034D01Rik 9 43993984 to 44000673 6689 + unclassified non-coding RNA gene RIKEN cDNA E230034D01 gene
Gm47345 9 43996471 to 43998593 2122 - unclassified gene predicted gene, 47345