Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:43424114-44046436

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66 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D9Mit190 9 43433053 to 43433197 144 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 190
Gm47475 9 43438965 to 43444438 5473 - lincRNA gene predicted gene, 47475
D9Mit329 9 43450360 to 43450476 116 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 329
Gm28215 9 43469422 to 43470317 895 + lincRNA gene predicted gene 28215
Gm36855 9 43506551 to 43521004 14453 - lincRNA gene predicted gene, 36855
Tssr89095 9 43521000 to 43521033 33 - TSS region transcription start site region 89095
Gm29909 9 43608184 to 43620810 12626 + lincRNA gene predicted gene, 29909
Gm29961 9 43642082 to 43645157 3075 - lincRNA gene predicted gene, 29961
D9Mit189 9 43658214 to 43658349 135 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 189
Gm5364 9 43683053 to 43683941 888 + pseudogene predicted gene 5364
Gm30015 9 43716841 to 43737126 20285 - lncRNA gene predicted gene, 30015
Gm47542 9 43734114 to 43736436 2322 - unclassified gene predicted gene, 47542
Tssr89096 9 43736965 to 43736992 27 - TSS region transcription start site region 89096
A030010E16Rik 9 43738859 to 43760228 21369 - lncRNA gene RIKEN cDNA A030010E16 gene
Cpgi21631 9 43743137 to 43745641 2504 CpG island CpG island 21631
Tssr84565 9 43743689 to 43743712 23 + TSS region transcription start site region 84565
Tssr84566 9 43743721 to 43743758 37 + TSS region transcription start site region 84566
Tssr84567 9 43743946 to 43743968 22 + TSS region transcription start site region 84567
Tssr84568 9 43743974 to 43744019 45 + TSS region transcription start site region 84568
Tssr84569 9 43744026 to 43744036 10 + TSS region transcription start site region 84569
Tssr84570 9 43744399 to 43744437 38 + TSS region transcription start site region 84570
Nectin1 9 43744576 to 43807461 62885 + protein coding gene nectin cell adhesion molecule 1
Gm46108 9 43773672 to 43787226 13554 - lncRNA gene predicted gene, 46108
Tssr84571 9 43794143 to 43794157 14 + TSS region transcription start site region 84571
Tssr84572 9 43796253 to 43796264 11 + TSS region transcription start site region 84572
Cpgi21632 9 43803431 to 43803909 478 CpG island CpG island 21632
Tssr84573 9 43804132 to 43804154 22 + TSS region transcription start site region 84573
Tssr84574 9 43804201 to 43804212 11 + TSS region transcription start site region 84574
Tssr84575 9 43804679 to 43804693 14 + TSS region transcription start site region 84575
D9Mit1007 9 43809795 to 43809937 142 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 1007
Gm3898 9 43829971 to 43832669 2698 + lincRNA gene predicted gene 3898
Cpgi21633 9 43864060 to 43864342 282 CpG island CpG island 21633
Tssr84576 9 43869403 to 43869405 2 + TSS region transcription start site region 84576
Cpgi21634 9 43879800 to 43880522 722 CpG island CpG island 21634
D9Mit129.1 9 43884995 to 43885104 109 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 129.1
Mtbcq9 9 43885124 to 43885255 131 QTL multiple trait body composition QTL 9
D9Mit129 9 43885124 to 43885255 131 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 129
Hdlq17 9 43885124 to 43885255 131 QTL HDL QTL 17
Stheal13 9 43885124 to 43885255 131 QTL soft tissue heal 13
Gm39322 9 43887471 to 43888630 1159 - lncRNA gene predicted gene, 39322
D9Ertd596e 9 43892064 to 43892314 250 DNA segment DNA segment, Chr 9, ERATO Doi 596, expressed
Gm23326 9 43905898 to 43906002 104 - snRNA gene predicted gene, 23326
Gm30373 9 43960966 to 43974170 13204 - lincRNA gene predicted gene, 30373
Gm10688 9 43978958 to 43979477 519 - lincRNA gene predicted gene 10688
Tssr84577 9 43993982 to 43993993 11 + TSS region transcription start site region 84577
E230034D01Rik 9 43993984 to 44000673 6689 + unclassified non-coding RNA gene RIKEN cDNA E230034D01 gene
Gm47345 9 43996471 to 43998593 2122 - unclassified gene predicted gene, 47345
Gm39323 9 44011735 to 44041059 29324 - lincRNA gene predicted gene, 39323
Cpgi21635 9 44020408 to 44020565 157 CpG island CpG island 21635
Tssr89097 9 44022165 to 44022185 20 - TSS region transcription start site region 89097
Tssr84578 9 44022362 to 44022378 16 + TSS region transcription start site region 84578
Tssr84579 9 44032170 to 44032181 11 + TSS region transcription start site region 84579
Tssr84580 9 44032188 to 44032195 7 + TSS region transcription start site region 84580
Tssr84581 9 44032244 to 44032249 5 + TSS region transcription start site region 84581
Tssr89098 9 44033990 to 44034008 18 - TSS region transcription start site region 89098
Tssr89099 9 44034056 to 44034070 14 - TSS region transcription start site region 89099
Tssr89100 9 44041138 to 44041167 29 - TSS region transcription start site region 89100
Tssr89101 9 44041169 to 44041191 22 - TSS region transcription start site region 89101
Tssr89102 9 44041372 to 44041403 31 - TSS region transcription start site region 89102
Tssr84582 9 44043211 to 44043253 42 + TSS region transcription start site region 84582
Tssr84583 9 44043267 to 44043280 13 + TSS region transcription start site region 84583
Cpgi21636 9 44043328 to 44043968 640 CpG island CpG island 21636
Thy1 9 44043384 to 44048579 5195 + protein coding gene thymus cell antigen 1, theta
Tssr84584 9 44043390 to 44043434 44 + TSS region transcription start site region 84584
Tssr84585 9 44045774 to 44045787 13 + TSS region transcription start site region 84585
Tssr84586 9 44045944 to 44045956 12 + TSS region transcription start site region 84586