Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:43278184-43950810

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60 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D630033O11Rik 9 43243599 to 43280076 36477 + lincRNA gene RIKEN cDNA D630033O11 gene
Cpgi21629 9 43286930 to 43287169 239 CpG island CpG island 21629
Tssr84552 9 43303214 to 43303225 11 + TSS region transcription start site region 84552
Tssr84553 9 43303231 to 43303240 9 + TSS region transcription start site region 84553
Tssr84554 9 43303253 to 43303268 15 + TSS region transcription start site region 84554
Tssr84555 9 43303278 to 43303289 11 + TSS region transcription start site region 84555
Tssr84556 9 43307569 to 43307581 12 + TSS region transcription start site region 84556
Tssr84557 9 43307664 to 43307678 14 + TSS region transcription start site region 84557
Tssr84558 9 43309750 to 43309761 11 + TSS region transcription start site region 84558
Tssr84559 9 43309885 to 43309928 43 + TSS region transcription start site region 84559
Tssr84560 9 43310787 to 43310806 19 + TSS region transcription start site region 84560
Tssr84561 9 43310807 to 43310818 11 + TSS region transcription start site region 84561
Trim29 9 43310848 to 43336115 25267 + protein coding gene tripartite motif-containing 29
Tssr84562 9 43311106 to 43311128 22 + TSS region transcription start site region 84562
Tssr84563 9 43311148 to 43311159 11 + TSS region transcription start site region 84563
Cpgi21630 9 43311252 to 43311567 315 CpG island CpG island 21630
Tssr84564 9 43320516 to 43320536 20 + TSS region transcription start site region 84564
Gm36799 9 43357593 to 43378406 20813 + lincRNA gene predicted gene, 36799
D9Mit190 9 43433053 to 43433197 144 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 190
Gm47475 9 43438965 to 43444438 5473 - lincRNA gene predicted gene, 47475
D9Mit329 9 43450360 to 43450476 116 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 329
Gm28215 9 43469422 to 43470317 895 + lincRNA gene predicted gene 28215
Gm36855 9 43506551 to 43521004 14453 - lincRNA gene predicted gene, 36855
Tssr89095 9 43521000 to 43521033 33 - TSS region transcription start site region 89095
Gm29909 9 43608184 to 43620810 12626 + lincRNA gene predicted gene, 29909
Gm29961 9 43642082 to 43645157 3075 - lincRNA gene predicted gene, 29961
D9Mit189 9 43658214 to 43658349 135 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 189
Gm5364 9 43683053 to 43683941 888 + pseudogene predicted gene 5364
Gm30015 9 43716841 to 43737126 20285 - lncRNA gene predicted gene, 30015
Gm47542 9 43734114 to 43736436 2322 - unclassified gene predicted gene, 47542
Tssr89096 9 43736965 to 43736992 27 - TSS region transcription start site region 89096
A030010E16Rik 9 43738859 to 43760228 21369 - lncRNA gene RIKEN cDNA A030010E16 gene
Cpgi21631 9 43743137 to 43745641 2504 CpG island CpG island 21631
Tssr84565 9 43743689 to 43743712 23 + TSS region transcription start site region 84565
Tssr84566 9 43743721 to 43743758 37 + TSS region transcription start site region 84566
Tssr84567 9 43743946 to 43743968 22 + TSS region transcription start site region 84567
Tssr84568 9 43743974 to 43744019 45 + TSS region transcription start site region 84568
Tssr84569 9 43744026 to 43744036 10 + TSS region transcription start site region 84569
Tssr84570 9 43744399 to 43744437 38 + TSS region transcription start site region 84570
Nectin1 9 43744576 to 43807461 62885 + protein coding gene nectin cell adhesion molecule 1
Gm46108 9 43773672 to 43787226 13554 - lncRNA gene predicted gene, 46108
Tssr84571 9 43794143 to 43794157 14 + TSS region transcription start site region 84571
Tssr84572 9 43796253 to 43796264 11 + TSS region transcription start site region 84572
Cpgi21632 9 43803431 to 43803909 478 CpG island CpG island 21632
Tssr84573 9 43804132 to 43804154 22 + TSS region transcription start site region 84573
Tssr84574 9 43804201 to 43804212 11 + TSS region transcription start site region 84574
Tssr84575 9 43804679 to 43804693 14 + TSS region transcription start site region 84575
D9Mit1007 9 43809795 to 43809937 142 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 1007
Gm3898 9 43829971 to 43832669 2698 + lincRNA gene predicted gene 3898
Cpgi21633 9 43864060 to 43864342 282 CpG island CpG island 21633
Tssr84576 9 43869403 to 43869405 2 + TSS region transcription start site region 84576
Cpgi21634 9 43879800 to 43880522 722 CpG island CpG island 21634
D9Mit129.1 9 43884995 to 43885104 109 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 129.1
Mtbcq9 9 43885124 to 43885255 131 QTL multiple trait body composition QTL 9
D9Mit129 9 43885124 to 43885255 131 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 129
Stheal13 9 43885124 to 43885255 131 QTL soft tissue heal 13
Hdlq17 9 43885124 to 43885255 131 QTL HDL QTL 17
Gm39322 9 43887471 to 43888630 1159 - lncRNA gene predicted gene, 39322
D9Ertd596e 9 43892064 to 43892314 250 DNA segment DNA segment, Chr 9, ERATO Doi 596, expressed
Gm23326 9 43905898 to 43906002 104 - snRNA gene predicted gene, 23326