Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:41374820-41574882

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27 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi21612 9 41376248 to 41376798 550 CpG island CpG island 21612
Tssr84498 9 41376392 to 41376406 14 + TSS region transcription start site region 84498
Tssr84499 9 41376412 to 41376434 22 + TSS region transcription start site region 84499
Tssr84500 9 41376466 to 41376485 19 + TSS region transcription start site region 84500
Tssr84501 9 41376488 to 41376497 9 + TSS region transcription start site region 84501
3110039I08Rik 9 41376526 to 41615185 238659 + lncRNA gene RIKEN cDNA 3110039I08 gene
Tssr84502 9 41376898 to 41376908 10 + TSS region transcription start site region 84502
Tssr84503 9 41378432 to 41378464 32 + TSS region transcription start site region 84503
Tssr84504 9 41396279 to 41396280 1 + TSS region transcription start site region 84504
Gm48742 9 41405374 to 41532087 126713 - lincRNA gene predicted gene, 48742
Gm48739 9 41419051 to 41419482 431 + pseudogene predicted gene, 48739
Tssr84505 9 41446677 to 41446688 11 + TSS region transcription start site region 84505
Tssr84506 9 41446689 to 41446717 28 + TSS region transcription start site region 84506
Tssr84507 9 41447106 to 41447110 4 + TSS region transcription start site region 84507
Tssr84508 9 41474820 to 41474882 62 + TSS region transcription start site region 84508
Gm49317 9 41474855 to 41655483 180628 + lincRNA gene predicted gene, 49317
D9Mit227 9 41490866 to 41490948 82 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 227
Lfibq8 9 41490866 to 45432445 3941579 QTL liver fibrosis QTL 8
Gm48736 9 41513525 to 41513780 255 - pseudogene predicted gene, 48736
Tssr84509 9 41523852 to 41523883 31 + TSS region transcription start site region 84509
Mir100 9 41531425 to 41531504 79 + miRNA gene microRNA 100
Tssr84510 9 41531492 to 41531499 7 + TSS region transcription start site region 84510
Tssr84511 9 41531998 to 41532021 23 + TSS region transcription start site region 84511
Mirlet7a-2 9 41536716 to 41536811 95 + miRNA gene microRNA let7a-2
Gm48740 9 41551506 to 41559259 7753 - lincRNA gene predicted gene, 48740
D9Mit139.1 9 41554158 to 41554282 124 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 139.1
D9Mit139 9 41554260 to 41554397 137 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 139