MPD: Genes and genomic regions

Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g. 17:44-45 ..or.. X:22500000-23000000

Click here to work with the entire chromosomal region 9:40603495-40726505

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19 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Igan3	9	30503398 to 40654618	10151220		QTL	IgA nephropathy 3
Gm48284	9	40606416 to 40616386	9970	-	lincRNA gene	predicted gene, 48284
Cpgi21596	9	40608016 to 40608305	289		CpG island	CpG island 21596
D9Mit285	9	40654494 to 40654618	124		DNA segment	DNA segment, Chr 9, Massachusetts Institute of Technology 285
Gm39319	9	40663495 to 40666505	3010	-	lncRNA gene	predicted gene, 39319
Gm35371	9	40667960 to 40669107	1147	-	lincRNA gene	predicted gene, 35371
Gm21915	9	40670613 to 40671014	401	+	protein coding gene	predicted gene, 21915
Gm48288	9	40679645 to 40680407	762	-	pseudogene	predicted gene, 48288
Cpgi21597	9	40685733 to 40686726	993		CpG island	CpG island 21597
Tssr84456	9	40685954 to 40685976	22	+	TSS region	transcription start site region 84456
Clmp	9	40685962 to 40785319	99357	+	protein coding gene	CXADR-like membrane protein
Tssr84457	9	40685988 to 40685999	11	+	TSS region	transcription start site region 84457
Tssr84458	9	40686002 to 40686059	57	+	TSS region	transcription start site region 84458
Tssr84459	9	40687842 to 40687853	11	+	TSS region	transcription start site region 84459
Tssr88967	9	40687906 to 40687911	5	-	TSS region	transcription start site region 88967
Tssr84460	9	40696117 to 40696120	3	+	TSS region	transcription start site region 84460
Tssr84461	9	40710109 to 40710115	6	+	TSS region	transcription start site region 84461
Gm48294	9	40715158 to 40720034	4876	+	sense intronic lncRNA gene	predicted gene, 48294
Gm16095	9	40718906 to 40719986	1080	-	antisense lncRNA gene	predicted gene 16095