Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:40529494-40779618

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41 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Igan3 9 30503398 to 40654618 10151220 QTL IgA nephropathy 3
Gramd1b 9 40293233 to 40531383 238150 - protein coding gene GRAM domain containing 1B
Cpgi21595 9 40530980 to 40531674 694 CpG island CpG island 21595
Tssr88962 9 40531103 to 40531127 24 - TSS region transcription start site region 88962
Gm17540 9 40531155 to 40533620 2465 + lincRNA gene predicted gene, 17540
Tssr88963 9 40531291 to 40531306 15 - TSS region transcription start site region 88963
Tssr88964 9 40531316 to 40531334 18 - TSS region transcription start site region 88964
Tssr88965 9 40531362 to 40531390 28 - TSS region transcription start site region 88965
Tssr88966 9 40531461 to 40531473 12 - TSS region transcription start site region 88966
Gm35177 9 40547307 to 40560007 12700 + lincRNA gene predicted gene, 35177
Gm48277 9 40555086 to 40560929 5843 - lincRNA gene predicted gene, 48277
Tssr84455 9 40575333 to 40575378 45 + TSS region transcription start site region 84455
Gm48284 9 40606416 to 40616386 9970 - lincRNA gene predicted gene, 48284
Cpgi21596 9 40608016 to 40608305 289 CpG island CpG island 21596
D9Mit285 9 40654494 to 40654618 124 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 285
Gm39319 9 40663495 to 40666505 3010 - lncRNA gene predicted gene, 39319
Gm35371 9 40667960 to 40669107 1147 - lincRNA gene predicted gene, 35371
Gm21915 9 40670613 to 40671014 401 + protein coding gene predicted gene, 21915
Gm48288 9 40679645 to 40680407 762 - pseudogene predicted gene, 48288
Cpgi21597 9 40685733 to 40686726 993 CpG island CpG island 21597
Tssr84456 9 40685954 to 40685976 22 + TSS region transcription start site region 84456
Clmp 9 40685962 to 40785319 99357 + protein coding gene CXADR-like membrane protein
Tssr84457 9 40685988 to 40685999 11 + TSS region transcription start site region 84457
Tssr84458 9 40686002 to 40686059 57 + TSS region transcription start site region 84458
Tssr84459 9 40687842 to 40687853 11 + TSS region transcription start site region 84459
Tssr88967 9 40687906 to 40687911 5 - TSS region transcription start site region 88967
Tssr84460 9 40696117 to 40696120 3 + TSS region transcription start site region 84460
Tssr84461 9 40710109 to 40710115 6 + TSS region transcription start site region 84461
Gm48294 9 40715158 to 40720034 4876 + sense intronic lncRNA gene predicted gene, 48294
Gm16095 9 40718906 to 40719986 1080 - antisense lncRNA gene predicted gene 16095
Cpgi21598 9 40730716 to 40731105 389 CpG island CpG island 21598
Tssr84462 9 40730954 to 40730978 24 + TSS region transcription start site region 84462
Tssr84463 9 40731003 to 40731014 11 + TSS region transcription start site region 84463
D9Mit253 9 40734078 to 40734294 216 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 253
Sluc39 9 40734078 to 48440176 7706098 QTL susceptibility to lung cancer 39
Gm48293 9 40747281 to 40762673 15392 - antisense lncRNA gene predicted gene, 48293
Cpgi21599 9 40757860 to 40758210 350 CpG island CpG island 21599
Tssr84464 9 40770767 to 40770792 25 + TSS region transcription start site region 84464
Cpgi21600 9 40772389 to 40772905 516 CpG island CpG island 21600
Tssr84465 9 40774413 to 40774429 16 + TSS region transcription start site region 84465
Tssr84466 9 40776762 to 40776785 23 + TSS region transcription start site region 84466