Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:36470040-38620047

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306 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Elnv 9 31360262 to 37395074 6034812 QTL epilepsy naive
Tlf 9 34926452 to 37395074 2468622 QTL T lymphocyte fraction
Tssr84364 9 36475580 to 36475585 5 + TSS region transcription start site region 84364
Pate11 9 36475638 to 36477186 1548 + protein coding gene prostate and testis expressed 11
Tssr84365 9 36481889 to 36481892 3 + TSS region transcription start site region 84365
Gm27160 9 36482296 to 36482494 198 + pseudogene predicted gene 27160
Tssr88777 9 36493295 to 36493309 14 - TSS region transcription start site region 88777
Tssr88778 9 36493361 to 36493368 7 - TSS region transcription start site region 88778
Tssr88779 9 36529446 to 36529464 18 - TSS region transcription start site region 88779
Tssr88780 9 36532174 to 36532180 6 - TSS region transcription start site region 88780
Pate9 9 36532403 to 36541963 9560 - protein coding gene prostate and testis expressed 9
Tssr88781 9 36533728 to 36533770 42 - TSS region transcription start site region 88781
Tssr88782 9 36533800 to 36533811 11 - TSS region transcription start site region 88782
Tssr88783 9 36533852 to 36533868 16 - TSS region transcription start site region 88783
Tssr88784 9 36534006 to 36534015 9 - TSS region transcription start site region 88784
Tssr88785 9 36534023 to 36534024 1 - TSS region transcription start site region 88785
Gm27218 9 36537932 to 36538323 391 + pseudogene predicted gene 27218
Tssr88786 9 36541886 to 36541901 15 - TSS region transcription start site region 88786
D9Mit226 9 36546048 to 36546368 320 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 226
Gm48431 9 36567701 to 36567969 268 + pseudogene predicted gene, 48431
Pate8 9 36581278 to 36582635 1357 - protein coding gene prostate and testis expressed 8
Tssr88787 9 36599487 to 36599495 8 - TSS region transcription start site region 88787
Gm49367 9 36635753 to 36692969 57216 - unclassified non-coding RNA gene predicted gene, 49367
Pate14 9 36635754 to 36638602 2848 - protein coding gene prostate and testis expressed 14
Tssr88788 9 36637226 to 36637238 12 - TSS region transcription start site region 88788
Tssr88789 9 36638595 to 36638609 14 - TSS region transcription start site region 88789
1700027I24Rik 9 36668856 to 36693189 24333 - bidirectional promoter lncRNA gene RIKEN cDNA 1700027I24 gene
Gm48443 9 36672697 to 36676537 3840 + pseudogene predicted gene, 48443
Tssr88790 9 36693111 to 36693123 12 - TSS region transcription start site region 88790
Tssr88791 9 36693130 to 36693141 11 - TSS region transcription start site region 88791
Tssr88792 9 36693143 to 36693149 6 - TSS region transcription start site region 88792
Tssr88793 9 36693158 to 36693164 6 - TSS region transcription start site region 88793
Tssr84366 9 36693217 to 36693221 4 + TSS region transcription start site region 84366
Acrv1 9 36693220 to 36698837 5617 + protein coding gene acrosomal vesicle protein 1
Tssr84367 9 36693225 to 36693232 7 + TSS region transcription start site region 84367
Tssr84368 9 36693247 to 36693256 9 + TSS region transcription start site region 84368
Chek1 9 36708482 to 36726658 18176 - protein coding gene checkpoint kinase 1
Tssr88794 9 36726140 to 36726155 15 - TSS region transcription start site region 88794
Cpgi21562 9 36726155 to 36727084 929 CpG island CpG island 21562
Tssr88795 9 36726588 to 36726607 19 - TSS region transcription start site region 88795
Tssr88796 9 36726627 to 36726636 9 - TSS region transcription start site region 88796
Tssr84369 9 36726675 to 36726722 47 + TSS region transcription start site region 84369
Stt3a 9 36729345 to 36767679 38334 - protein coding gene STT3, subunit of the oligosaccharyltransferase complex, homolog A (S. cerevisiae)
Tssr88797 9 36730022 to 36730025 3 - TSS region transcription start site region 88797
Tssr88798 9 36731060 to 36731065 5 - TSS region transcription start site region 88798
Tssr88799 9 36757000 to 36757011 11 - TSS region transcription start site region 88799
Tssr88800 9 36757021 to 36757036 15 - TSS region transcription start site region 88800
Tssr88801 9 36759239 to 36759253 14 - TSS region transcription start site region 88801
Tssr88802 9 36760284 to 36760288 4 - TSS region transcription start site region 88802
Cpgi21563 9 36767104 to 36768222 1118 CpG island CpG island 21563
Tssr88803 9 36767572 to 36767586 14 - TSS region transcription start site region 88803
Tssr88804 9 36767595 to 36767638 43 - TSS region transcription start site region 88804
Gm26787 9 36767657 to 36782191 14534 + antisense lncRNA gene predicted gene, 26787
Tssr84370 9 36767881 to 36767892 11 + TSS region transcription start site region 84370
Tssr84371 9 36768012 to 36768031 19 + TSS region transcription start site region 84371
Ei24 9 36779159 to 36797393 18234 - protein coding gene etoposide induced 2.4 mRNA
Tssr88805 9 36779838 to 36779850 12 - TSS region transcription start site region 88805
Tssr88806 9 36779997 to 36780012 15 - TSS region transcription start site region 88806
Tssr88807 9 36780036 to 36780055 19 - TSS region transcription start site region 88807
Tssr88808 9 36782795 to 36782812 17 - TSS region transcription start site region 88808
Tssr88809 9 36784553 to 36784581 28 - TSS region transcription start site region 88809
Tssr88810 9 36784817 to 36784824 7 - TSS region transcription start site region 88810
Tssr88811 9 36785980 to 36785998 18 - TSS region transcription start site region 88811
Cpgi21564 9 36796808 to 36797513 705 CpG island CpG island 21564
Tssr88812 9 36797282 to 36797293 11 - TSS region transcription start site region 88812
Tssr88813 9 36797303 to 36797425 122 - TSS region transcription start site region 88813
Tssr88814 9 36798696 to 36798701 5 - TSS region transcription start site region 88814
Gm27219 9 36813133 to 36813874 741 - pseudogene predicted gene 27219
Fez1 9 36821891 to 36878927 57036 + protein coding gene fasciculation and elongation protein zeta 1 (zygin I)
D9Mit224 9 36824947 to 36825057 110 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 224
Rapop7 9 36824947 to 49509211 12684264 QTL radiation-induced apoptosis 6
D9Mit128 9 36827484 to 36827625 141 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 128
Cpgi21565 9 36832613 to 36832945 332 CpG island CpG island 21565
Tssr84372 9 36832700 to 36832855 155 + TSS region transcription start site region 84372
Cpgi21566 9 36833347 to 36833750 403 CpG island CpG island 21566
2900046B09Rik 9 36847744 to 36848420 676 unclassified gene RIKEN cDNA 2900046B09 gene
Tssr84373 9 36850377 to 36850392 15 + TSS region transcription start site region 84373
Pknox2 9 36890979 to 37147327 256348 - protein coding gene Pbx/knotted 1 homeobox 2
Tssr88815 9 36923619 to 36923628 9 - TSS region transcription start site region 88815
D9Mit252 9 36969136 to 36969250 114 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 252
Gm34652 9 36972672 to 36979931 7259 + lncRNA gene predicted gene, 34652
Tssr2826 9 37008198 to 37008200 2 + TSS region transcription start site region 2826
Gm3896 9 37015758 to 37020671 4913 + antisense lncRNA gene predicted gene 3896
Tssr88816 9 37019825 to 37019849 24 - TSS region transcription start site region 88816
n-R5s82 9 37026399 to 37026507 108 + rRNA gene nuclear encoded rRNA 5S 82
D9Mit67 9 37032110 to 37032229 119 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 67
Pvcan2 9 37032110 to 37032229 119 QTL protection against vaginal candidiasis 2
Lmr2 9 37032110 to 50199840 13167730 QTL leishmaniasis resistance 2
Gm34538 9 37034688 to 37069714 35026 + lncRNA gene predicted gene, 34538
Gm48716 9 37118656 to 37120064 1408 + antisense lncRNA gene predicted gene, 48716
D9Mit247 9 37132907 to 37133055 148 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 247
Gm48717 9 37138553 to 37139624 1071 - unclassified gene predicted gene, 48717
Cpgi21567 9 37145148 to 37147580 2432 CpG island CpG island 21567
Tssr88817 9 37147257 to 37147323 66 - TSS region transcription start site region 88817
Gm25273 9 37172880 to 37172994 114 - snoRNA gene predicted gene, 25273
Cpgi21568 9 37207929 to 37208480 551 CpG island CpG island 21568
Tssr88818 9 37208031 to 37208034 3 - TSS region transcription start site region 88818
Tssr84374 9 37208176 to 37208195 19 + TSS region transcription start site region 84374
Tmem218 9 37208223 to 37223228 15005 + protein coding gene transmembrane protein 218
Tssr84375 9 37208291 to 37208360 69 + TSS region transcription start site region 84375
Slc37a2 9 37229149 to 37255738 26589 - protein coding gene solute carrier family 37 (glycerol-3-phosphate transporter), member 2
Tssr88819 9 37233675 to 37233693 18 - TSS region transcription start site region 88819
Tssr88820 9 37238798 to 37238801 3 - TSS region transcription start site region 88820
Morph2 9 37242066 to 37242196 130 QTL morphine antinociception 2
D9Mit91 9 37242066 to 37242196 130 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 91
Pid2 9 37242066 to 44340026 7097960 QTL prion incubation determinant 2
Tssr84376 9 37247713 to 37247760 47 + TSS region transcription start site region 84376
Gm10177 9 37252922 to 37253365 443 + pseudogene predicted gene 10177
Cpgi21569 9 37255172 to 37255587 415 CpG island CpG island 21569
Tssr88821 9 37255357 to 37255364 7 - TSS region transcription start site region 88821
Tssr88822 9 37255381 to 37255392 11 - TSS region transcription start site region 88822
Tssr88823 9 37255403 to 37255419 16 - TSS region transcription start site region 88823
Tssr88824 9 37255429 to 37255442 13 - TSS region transcription start site region 88824
Tssr88825 9 37255444 to 37255461 17 - TSS region transcription start site region 88825
Gm48081 9 37255498 to 37256149 651 + antisense lncRNA gene predicted gene, 48081
Tssr88826 9 37255530 to 37255553 23 - TSS region transcription start site region 88826
Tssr88827 9 37255623 to 37255635 12 - TSS region transcription start site region 88827
Tssr88828 9 37255646 to 37255665 19 - TSS region transcription start site region 88828
Tssr88829 9 37255669 to 37255683 14 - TSS region transcription start site region 88829
Tssr88830 9 37255685 to 37255711 26 - TSS region transcription start site region 88830
Tssr88831 9 37255730 to 37255744 14 - TSS region transcription start site region 88831
Gm47633 9 37264093 to 37264659 566 - lincRNA gene predicted gene, 47633
Gm47640 9 37269287 to 37272168 2881 + unclassified gene predicted gene, 47640
Gm18329 9 37275258 to 37275830 572 + pseudogene predicted gene, 18329
Ccdc15 9 37275835 to 37348432 72597 - protein coding gene coiled-coil domain containing 15
Gm47643 9 37296126 to 37299361 3235 - unclassified gene predicted gene, 47643
D9Mit205 9 37298324 to 37298517 193 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 205
Gm34885 9 37312136 to 37324436 12300 + antisense lncRNA gene predicted gene, 34885
Gm47652 9 37329767 to 37334429 4662 - unclassified gene predicted gene, 47652
Cpgi21570 9 37348096 to 37348677 581 CpG island CpG island 21570
Tssr88832 9 37348312 to 37348321 9 - TSS region transcription start site region 88832
Tssr88833 9 37348339 to 37348366 27 - TSS region transcription start site region 88833
Tssr88834 9 37348369 to 37348391 22 - TSS region transcription start site region 88834
Tssr88835 9 37348395 to 37348422 27 - TSS region transcription start site region 88835
Tssr84377 9 37348443 to 37348502 59 + TSS region transcription start site region 84377
Tssr84378 9 37348540 to 37348549 9 + TSS region transcription start site region 84378
Tssr84379 9 37367334 to 37367347 13 + TSS region transcription start site region 84379
Tssr84380 9 37367354 to 37367378 24 + TSS region transcription start site region 84380
Hepacam 9 37367606 to 37386572 18966 + protein coding gene hepatocyte cell adhesion molecule
Tssr84381 9 37367627 to 37367656 29 + TSS region transcription start site region 84381
Tssr84382 9 37367666 to 37367672 6 + TSS region transcription start site region 84382
Tssr84383 9 37367677 to 37367682 5 + TSS region transcription start site region 84383
Tssr84384 9 37379844 to 37379873 29 + TSS region transcription start site region 84384
Cpgi21571 9 37380482 to 37380770 288 CpG island CpG island 21571
Cpgi21572 9 37384280 to 37385027 747 CpG island CpG island 21572
Tssr84385 9 37385905 to 37385920 15 + TSS region transcription start site region 84385
Tssr84386 9 37385942 to 37385957 15 + TSS region transcription start site region 84386
Pbft5 9 37394901 to 37395074 173 QTL percent body fat 5
D9Mit2 9 37394901 to 37395074 173 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 2
Skull12 9 37394901 to 37395074 173 QTL skull morphology 12
Lmr17 9 37394901 to 37395074 173 QTL leishmaniasis resistance 17
Alpq3 9 37394901 to 98819654 61424753 QTL alcohol preference QTL 3
Sluc10 9 37394901 to 37395074 173 QTL susceptibility to lung cancer 10
Sles4 9 37395074 to 9107561 -28287513 QTL systemic lupus erythmatosus suppressor 4
Tssr84387 9 37400216 to 37400223 7 + TSS region transcription start site region 84387
Robo4 9 37401897 to 37414023 12126 + protein coding gene roundabout guidance receptor 4
Tssr84388 9 37401963 to 37401980 17 + TSS region transcription start site region 84388
Tssr84389 9 37401993 to 37402057 64 + TSS region transcription start site region 84389
Tssr84390 9 37402066 to 37402077 11 + TSS region transcription start site region 84390
Robo3 9 37416045 to 37433435 17390 - protein coding gene roundabout guidance receptor 3
Cpgi21573 9 37420685 to 37421596 911 CpG island CpG island 21573
Cpgi21574 9 37429474 to 37429820 346 CpG island CpG island 21574
Tssr88836 9 37430882 to 37430898 16 - TSS region transcription start site region 88836
Cpgi21575 9 37432833 to 37433371 538 CpG island CpG island 21575
Tssr88837 9 37433112 to 37433123 11 - TSS region transcription start site region 88837
Tssr88838 9 37433138 to 37433167 29 - TSS region transcription start site region 88838
Tssr88839 9 37433246 to 37433250 4 - TSS region transcription start site region 88839
Tssr84391 9 37434172 to 37434211 39 + TSS region transcription start site region 84391
Cpgi21576 9 37456500 to 37456941 441 CpG island CpG island 21576
Cpgi21577 9 37459964 to 37460957 993 CpG island CpG island 21577
Gm47945 9 37478453 to 37478643 190 - pseudogene predicted gene, 47945
BB236558 9 37487977 to 37489097 1120 unclassified gene expressed sequence BB236558
Tssr84392 9 37488770 to 37488782 12 + TSS region transcription start site region 84392
Cpgi21578 9 37488814 to 37490314 1500 CpG island CpG island 21578
Tssr84393 9 37488988 to 37488999 11 + TSS region transcription start site region 84393
Tssr84394 9 37489023 to 37489050 27 + TSS region transcription start site region 84394
Tssr2827 9 37489062 to 37489079 17 + TSS region transcription start site region 2827
Tssr84395 9 37489281 to 37489326 45 + TSS region transcription start site region 84395
Msantd2 9 37489319 to 37524625 35306 + protein coding gene Myb/SANT-like DNA-binding domain containing 2
Tssr88840 9 37489829 to 37489853 24 - TSS region transcription start site region 88840
Gm47963 9 37497769 to 37499912 2143 + unclassified gene predicted gene, 47963
Cpgi21579 9 37527663 to 37528179 516 CpG island CpG island 21579
Tssr84396 9 37528047 to 37528058 11 + TSS region transcription start site region 84396
Tssr84397 9 37528071 to 37528148 77 + TSS region transcription start site region 84397
Esam 9 37528089 to 37538319 10230 + protein coding gene endothelial cell-specific adhesion molecule
Cpgi21580 9 37530276 to 37530697 421 CpG island CpG island 21580
Cpgi21581 9 37530932 to 37531323 391 CpG island CpG island 21581
Tssr84398 9 37531121 to 37531138 17 + TSS region transcription start site region 84398
Vsig2 9 37539255 to 37544205 4950 + protein coding gene V-set and immunoglobulin domain containing 2
Tssr84399 9 37539265 to 37539279 14 + TSS region transcription start site region 84399
Cpgi21582 9 37539842 to 37540078 236 CpG island CpG island 21582
Nrgn 9 37544493 to 37552745 8252 - protein coding gene neurogranin
Tssr88841 9 37544553 to 37544563 10 - TSS region transcription start site region 88841
Tssr88842 9 37544565 to 37544578 13 - TSS region transcription start site region 88842
Tssr84400 9 37544953 to 37544958 5 + TSS region transcription start site region 84400
Cpgi21583 9 37544965 to 37545318 353 CpG island CpG island 21583
Tssr88843 9 37544966 to 37545018 52 - TSS region transcription start site region 88843
Tssr84401 9 37544995 to 37545006 11 + TSS region transcription start site region 84401
Tssr88844 9 37545024 to 37545035 11 - TSS region transcription start site region 88844
Tssr84402 9 37545040 to 37545047 7 + TSS region transcription start site region 84402