Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:32806644-35056875

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm3331 9 32813734 to 32834104 20370 + lincRNA gene predicted gene 3331
Adq1 9 32838331 to 32838331 0 QTL aortic diameter QTL 1
Adq2 9 32838331 to 32838331 0 QTL aortic diameter QTL 2
Pdcc3 9 32838331 to 32838331 0 QTL plasmacytoid dentritic cell compartment 3
Gm37167 9 32839527 to 32839922 395 - unclassified gene predicted gene, 37167
Tssr88697 9 32901446 to 32901452 6 - TSS region transcription start site region 88697
Gm27162 9 32904937 to 32928966 24029 - lincRNA gene predicted gene 27162
Tssr84304 9 32906557 to 32906568 11 + TSS region transcription start site region 84304
Tssr84305 9 32906589 to 32906598 9 + TSS region transcription start site region 84305
Tssr84306 9 32910922 to 32910933 11 + TSS region transcription start site region 84306
Tssr84307 9 32913059 to 32913066 7 + TSS region transcription start site region 84307
Tssr88698 9 32915633 to 32915639 6 - TSS region transcription start site region 88698
Tssr88699 9 32915655 to 32915668 13 - TSS region transcription start site region 88699
Tssr84308 9 32915971 to 32916003 32 + TSS region transcription start site region 84308
Tssr88700 9 32924484 to 32924515 31 - TSS region transcription start site region 88700
Tssr84309 9 32926400 to 32926420 20 + TSS region transcription start site region 84309
Tssr84310 9 32926511 to 32926525 14 + TSS region transcription start site region 84310
Tssr84311 9 32926605 to 32926620 15 + TSS region transcription start site region 84311
Tssr88701 9 32928329 to 32928354 25 - TSS region transcription start site region 88701
Tssr84312 9 32928714 to 32928720 6 + TSS region transcription start site region 84312
Tssr88702 9 32928928 to 32928932 4 - TSS region transcription start site region 88702
Tssr88703 9 32959605 to 32959613 8 - TSS region transcription start site region 88703
Tssr84313 9 32963053 to 32963079 26 + TSS region transcription start site region 84313
Gm37192 9 32971037 to 32972384 1347 + unclassified gene predicted gene, 37192
Gm27166 9 33031791 to 33090799 59008 + lincRNA gene predicted gene 27166
V125Dq8 9 33100000 to 33100000 0 QTL vitamin D active form serum level QTL 8
V125Dq7 9 33100000 to 33100000 0 QTL vitamin D active form serum level QTL 7
Gm37758 9 33160062 to 33160690 628 - unclassified gene predicted gene, 37758
Gm32171 9 33254462 to 33262518 8056 + lincRNA gene predicted gene, 32171
Gm47775 9 33296244 to 33308803 12559 + lincRNA gene predicted gene, 47775
Cpgi21545 9 33359998 to 33360156 158 CpG island CpG island 21545
Gm47777 9 33482183 to 33492014 9831 - lincRNA gene predicted gene, 47777
Gm47778 9 33597365 to 33600468 3103 + lincRNA gene predicted gene, 47778
Tssr84314 9 33728157 to 33728159 2 + TSS region transcription start site region 84314
Tmed2b 9 33728165 to 33729412 1247 + protein coding gene transmembrane p24 trafficking protein 2B
Gm10698 9 33728247 to 33728850 603 + pseudogene predicted gene 10698
Tssr84315 9 33728400 to 33728419 19 + TSS region transcription start site region 84315
Hdlq109 9 33798345 to 33798345 0 QTL HDL QTL 109
Gm47784 9 33861203 to 33864019 2816 + lincRNA gene predicted gene, 47784
Tssr2819 9 33867941 to 33867945 4 + TSS region transcription start site region 2819
Gm47785 9 33901917 to 33921449 19532 + lincRNA gene predicted gene, 47785
Gm25439 9 33917492 to 33917622 130 + snoRNA gene predicted gene, 25439
Gm27165 9 33931644 to 33931875 231 + pseudogene predicted gene 27165
Gm27164 9 33942310 to 34007173 64863 + lincRNA gene predicted gene 27164
Gm32359 9 34003957 to 34029898 25941 - lncRNA gene predicted gene, 32359
7630403G23Rik 9 34042371 to 34059019 16648 + lincRNA gene RIKEN cDNA 7630403G23 gene
D9Mit297 9 34067544 to 34067647 103 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 297
Vtbt6 9 34067544 to 34067647 103 QTL vertebral trabecular bone trait 6
Ibdq1 9 34067544 to 73531973 39464429 QTL inflammatory bowel disease QTL 1
Phdlc1 9 34193323 to 42853570 8660247 QTL plasma HDL cholesterol 1
D9Mit325 9 34193323 to 34193409 86 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 325
Gm27161 9 34200228 to 34200789 561 + pseudogene predicted gene 27161
Gm47858 9 34459181 to 34477056 17875 + lincRNA gene predicted gene, 47858
Cpgi21546 9 34485816 to 34486613 797 CpG island CpG island 21546
Kirrel3 9 34485848 to 35036315 550467 + protein coding gene kirre like nephrin family adhesion molecule 3
Cpgi21547 9 34488449 to 34489432 983 CpG island CpG island 21547
Tssr84316 9 34488721 to 34488745 24 + TSS region transcription start site region 84316
Tssr84317 9 34488787 to 34488807 20 + TSS region transcription start site region 84317
Tssr84318 9 34488821 to 34488835 14 + TSS region transcription start site region 84318
Gm38217 9 34521755 to 34522664 909 + unclassified gene predicted gene, 38217
Tssr84319 9 34546318 to 34546321 3 + TSS region transcription start site region 84319
Gm26662 9 34588526 to 34589304 778 - lincRNA gene predicted gene, 26662
Tssr88704 9 34589279 to 34589294 15 - TSS region transcription start site region 88704
Tssr88705 9 34589299 to 34589313 14 - TSS region transcription start site region 88705
Tssr84320 9 34636303 to 34636308 5 + TSS region transcription start site region 84320
Tssr84321 9 34647563 to 34647571 8 + TSS region transcription start site region 84321
Tssr84322 9 34686794 to 34686799 5 + TSS region transcription start site region 84322
Gm33777 9 34692095 to 34711952 19857 + lncRNA gene predicted gene, 33777
5330423I11Rik 9 34751328 to 34753246 1918 unclassified gene RIKEN cDNA 5330423I11 gene
Gm33613 9 34775339 to 34806226 30887 - lncRNA gene predicted gene, 33613
Tssr84323 9 34797802 to 34797806 4 + TSS region transcription start site region 84323
Gm33561 9 34823247 to 34854379 31132 - lncRNA gene predicted gene, 33561
Gm45955 9 34860082 to 34870544 10462 - lncRNA gene predicted gene, 45955
Kirrel3os 9 34918233 to 34929509 11276 - antisense lncRNA gene kirre like nephrin family adhesion molecule 3, opposite strand
D9Mit66 9 34926452 to 34926575 123 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 66
Tlf 9 34926452 to 37395074 2468622 QTL T lymphocyte fraction
Tssr88706 9 34948786 to 34948799 13 - TSS region transcription start site region 88706
Tssr2820 9 34948829 to 34948836 7 - TSS region transcription start site region 2820
Gm23702 9 34960019 to 34960148 129 + rRNA gene predicted gene, 23702
Tssr2821 9 35000441 to 35000446 5 + TSS region transcription start site region 2821
Tssr88707 9 35005776 to 35005818 42 - TSS region transcription start site region 88707
Cpgi21548 9 35017599 to 35017939 340 CpG island CpG island 21548
Cpgi21549 9 35034857 to 35035288 431 CpG island CpG island 21549
St3gal4 9 35046576 to 35116810 70234 - protein coding gene ST3 beta-galactoside alpha-2,3-sialyltransferase 4
Tssr88708 9 35053740 to 35053744 4 - TSS region transcription start site region 88708
Tssr88709 9 35054102 to 35054131 29 - TSS region transcription start site region 88709
Tssr84324 9 35054233 to 35054238 5 + TSS region transcription start site region 84324
Tssr88710 9 35055658 to 35055669 11 - TSS region transcription start site region 88710
Tssr88711 9 35055785 to 35055808 23 - TSS region transcription start site region 88711