Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:27932514-30892533

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108 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Opcml 9 27790775 to 28925410 1134635 + protein coding gene opioid binding protein/cell adhesion molecule-like
B230219J02Rik 9 27991146 to 27992073 927 unclassified non-coding RNA gene RIKEN cDNA B230219J02 gene
Gm33456 9 28020489 to 28021138 649 - pseudogene predicted gene, 33456
Tssr84176 9 28148281 to 28148284 3 + TSS region transcription start site region 84176
Tssr84177 9 28185439 to 28185464 25 + TSS region transcription start site region 84177
Gm15606 9 28197887 to 28199521 1634 + sense intronic lncRNA gene predicted gene 15606
Tssr84178 9 28256985 to 28256989 4 + TSS region transcription start site region 84178
Gm44316 9 28292748 to 28292844 96 + miRNA gene predicted gene, 44316
Gm39313 9 28364421 to 28402525 38104 - lncRNA gene predicted gene, 39313
Cpgi21517 9 28402854 to 28403954 1100 CpG island CpG island 21517
Tssr84179 9 28403295 to 28403339 44 + TSS region transcription start site region 84179
Tssr84180 9 28403480 to 28403496 16 + TSS region transcription start site region 84180
Tssr84181 9 28403513 to 28403536 23 + TSS region transcription start site region 84181
Tssr84182 9 28403538 to 28403552 14 + TSS region transcription start site region 84182
Tssr84183 9 28459982 to 28459987 5 + TSS region transcription start site region 84183
Tssr84184 9 28511022 to 28511034 12 + TSS region transcription start site region 84184
D9Mit63 9 28555677 to 28555778 101 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 63
D9Mit65 9 28592037 to 28592161 124 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 65
Obq5 9 28592037 to 41888030 13295993 QTL obesity QTL 5
D9Mit64 9 28592039 to 28592228 189 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 64
Tssr84185 9 28645850 to 28645853 3 + TSS region transcription start site region 84185
Tssr84186 9 28674995 to 28675001 6 + TSS region transcription start site region 84186
Tssr84187 9 28781186 to 28781190 4 + TSS region transcription start site region 84187
Gm48091 9 28794296 to 28954347 160051 - antisense lncRNA gene predicted gene, 48091
D9Mit324 9 28819187 to 28819432 245 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 324
Tssr84188 9 28920400 to 28920411 11 + TSS region transcription start site region 84188
Tssr84189 9 28920413 to 28920418 5 + TSS region transcription start site region 84189
Tssr84190 9 28920420 to 28920454 34 + TSS region transcription start site region 84190
Tssr84191 9 28920456 to 28920459 3 + TSS region transcription start site region 84191
Tssr84192 9 28920474 to 28920482 8 + TSS region transcription start site region 84192
Tssr84193 9 28920495 to 28920514 19 + TSS region transcription start site region 84193
Tssr84194 9 28920975 to 28920989 14 + TSS region transcription start site region 84194
Tssr84195 9 28921000 to 28921008 8 + TSS region transcription start site region 84195
Tssr84196 9 28921088 to 28921095 7 + TSS region transcription start site region 84196
Tssr84197 9 28921116 to 28921121 5 + TSS region transcription start site region 84197
Tssr84198 9 28944371 to 28944375 4 + TSS region transcription start site region 84198
D9Mit296 9 28945569 to 28945693 124 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 296
Ntm 9 28994750 to 29963141 968391 - protein coding gene neurotrimin
Tssr88576 9 28994786 to 28994797 11 - TSS region transcription start site region 88576
Tssr88577 9 28996054 to 28996064 10 - TSS region transcription start site region 88577
Tssr88578 9 28996065 to 28996096 31 - TSS region transcription start site region 88578
Tssr88579 9 28996097 to 28996112 15 - TSS region transcription start site region 88579
Tssr88580 9 28996206 to 28996223 17 - TSS region transcription start site region 88580
Tssr88581 9 28996279 to 28996288 9 - TSS region transcription start site region 88581
Tssr88582 9 28996392 to 28996397 5 - TSS region transcription start site region 88582
Tssr88583 9 28996500 to 28996515 15 - TSS region transcription start site region 88583
Tssr84199 9 29014045 to 29014066 21 + TSS region transcription start site region 84199
Cpgi21518 9 29014095 to 29014284 189 CpG island CpG island 21518
Gm15520 9 29059799 to 29070199 10400 + antisense lncRNA gene predicted gene 15520
Tssr88584 9 29179086 to 29179093 7 - TSS region transcription start site region 88584
D9Mit42 9 29321023 to 29321234 211 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 42
Tssr88585 9 29368231 to 29368234 3 - TSS region transcription start site region 88585
Cpgi21519 9 29411731 to 29412839 1108 CpG island CpG island 21519
Tssr88586 9 29411753 to 29411773 20 - TSS region transcription start site region 88586
Tssr88587 9 29411780 to 29411811 31 - TSS region transcription start site region 88587
Tssr88588 9 29411847 to 29411874 27 - TSS region transcription start site region 88588
Tssr88589 9 29412251 to 29412277 26 - TSS region transcription start site region 88589
Tssr88590 9 29412285 to 29412298 13 - TSS region transcription start site region 88590
Tssr88591 9 29412377 to 29412393 16 - TSS region transcription start site region 88591
Tssr88592 9 29412460 to 29412503 43 - TSS region transcription start site region 88592
Tssr88593 9 29412514 to 29412533 19 - TSS region transcription start site region 88593
Tssr88594 9 29412635 to 29412678 43 - TSS region transcription start site region 88594
Tssr84200 9 29442372 to 29442389 17 + TSS region transcription start site region 84200
Tssr84201 9 29442397 to 29442403 6 + TSS region transcription start site region 84201
D9Mit89 9 29458674 to 29458818 144 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 89
Tbs2 9 29458674 to 29458818 144 QTL tuberculosis severity 2
Tssr88595 9 29468325 to 29468327 2 - TSS region transcription start site region 88595
D9Mit138 9 29489060 to 29489180 120 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 138
D9Mit244 9 29556772 to 29556918 146 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 244
D9Mit244.2 9 29556863 to 29557002 139 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 244.2
Gm15521 9 29590484 to 29592510 2026 - sense intronic lncRNA gene predicted gene 15521
Tssr88596 9 29769330 to 29769334 4 - TSS region transcription start site region 88596
Tssr2815 9 29771503 to 29771504 1 + TSS region transcription start site region 2815
Tssr88597 9 29820950 to 29820952 2 - TSS region transcription start site region 88597
Tssr88598 9 29834434 to 29834439 5 - TSS region transcription start site region 88598
Tssr88599 9 29939790 to 29939801 11 - TSS region transcription start site region 88599
Paasd1 9 29949417 to 30285916 336499 QTL peak activity after sleep deprivation 1
Cpgi21520 9 29962373 to 29962886 513 CpG island CpG island 21520
Tssr88600 9 29963035 to 29963046 11 - TSS region transcription start site region 88600
Tssr88601 9 29963092 to 29963103 11 - TSS region transcription start site region 88601
Tssr88602 9 29963112 to 29963141 29 - TSS region transcription start site region 88602
Tssr88603 9 29963145 to 29963154 9 - TSS region transcription start site region 88603
Tssr88604 9 29963205 to 29963210 5 - TSS region transcription start site region 88604
Tssr84202 9 29992123 to 29992124 1 + TSS region transcription start site region 84202
Gm19640 9 30063256 to 30063719 463 - pseudogene predicted gene, 19640
Gm47677 9 30167575 to 30171881 4306 + lincRNA gene predicted gene, 47677
Gm26435 9 30291868 to 30291974 106 - snRNA gene predicted gene, 26435
Gm30933 9 30385980 to 30426976 40996 - bidirectional promoter lncRNA gene predicted gene, 30933
Cpgi21521 9 30426867 to 30427724 857 CpG island CpG island 21521
Tssr84203 9 30427016 to 30427019 3 + TSS region transcription start site region 84203
Tssr84204 9 30427033 to 30427108 75 + TSS region transcription start site region 84204
Snx19 9 30427108 to 30466733 39625 + protein coding gene sorting nexin 19
Tssr84205 9 30438868 to 30438899 31 + TSS region transcription start site region 84205
Obq37 9 30479879 to 30479879 0 QTL obesity QTL 37
Gm47714 9 30489959 to 30490376 417 + pseudogene predicted gene, 47714
D9Mit88 9 30503398 to 30503599 201 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 88
Igan3 9 30503398 to 40654618 10151220 QTL IgA nephropathy 3
Rps2-ps12 9 30512940 to 30513538 598 + pseudogene ribosomal protein S2, pseudogene 12
Tssr2816 9 30563233 to 30563236 3 + TSS region transcription start site region 2816
Gm47716 9 30625808 to 30632587 6779 - lincRNA gene predicted gene, 47716
Tssr84206 9 30669450 to 30669455 5 + TSS region transcription start site region 84206
Gm31013 9 30722035 to 30781479 59444 - lincRNA gene predicted gene, 31013
Tssr84207 9 30736562 to 30736568 6 + TSS region transcription start site region 84207
Gm47717 9 30752621 to 30752882 261 - pseudogene predicted gene, 47717
Tssr88605 9 30781365 to 30781371 6 - TSS region transcription start site region 88605
Tssr88606 9 30781388 to 30781396 8 - TSS region transcription start site region 88606
Tssr88607 9 30781407 to 30781427 20 - TSS region transcription start site region 88607
Gm31140 9 30872563 to 30879928 7365 - lncRNA gene predicted gene, 31140