Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:27054204-27602546

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28 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ncapd3 9 27030175 to 27095315 65140 + protein coding gene non-SMC condensin II complex, subunit D3
6720417O19Rik 9 27095942 to 27097356 1414 unclassified gene RIKEN cDNA 6720417O19 gene
Jam3 9 27097384 to 27155421 58037 - protein coding gene junction adhesion molecule 3
Gm48796 9 27098551 to 27102343 3792 + antisense lncRNA gene predicted gene, 48796
Gm46105 9 27143012 to 27148675 5663 - lncRNA gene predicted gene, 46105
Cpgi21514 9 27154825 to 27155677 852 CpG island CpG island 21514
Tssr88571 9 27155368 to 27155387 19 - TSS region transcription start site region 88571
Tssr88572 9 27155389 to 27155416 27 - TSS region transcription start site region 88572
Tssr88573 9 27155418 to 27155425 7 - TSS region transcription start site region 88573
Tssr88574 9 27187004 to 27187012 8 - TSS region transcription start site region 88574
Tssr84163 9 27191737 to 27191738 1 + TSS region transcription start site region 84163
Gm48801 9 27199590 to 27203298 3708 - lincRNA gene predicted gene, 48801
Gm48803 9 27291197 to 27293344 2147 - lincRNA gene predicted gene, 48803
Cpgi21515 9 27298950 to 27300621 1671 CpG island CpG island 21515
Igsf9b 9 27299204 to 27357546 58342 + protein coding gene immunoglobulin superfamily, member 9B
Tssr84164 9 27299205 to 27299254 49 + TSS region transcription start site region 84164
Tssr84165 9 27317352 to 27317383 31 + TSS region transcription start site region 84165
Tssr84166 9 27349024 to 27349031 7 + TSS region transcription start site region 84166
Tssr88575 9 27375953 to 27375954 1 - TSS region transcription start site region 88575
Gm48858 9 27386267 to 27386617 350 + pseudogene predicted gene, 48858
Tssr84167 9 27396791 to 27396823 32 + TSS region transcription start site region 84167
Spata19 9 27396807 to 27401711 4904 + protein coding gene spermatogenesis associated 19
Tssr84168 9 27397202 to 27397221 19 + TSS region transcription start site region 84168
Tssr84169 9 27397224 to 27397234 10 + TSS region transcription start site region 84169
Tssr84170 9 27397238 to 27397256 18 + TSS region transcription start site region 84170
Gm30791 9 27518888 to 27522491 3603 + lncRNA gene predicted gene, 30791
Gm48901 9 27553480 to 27554957 1477 + lincRNA gene predicted gene, 48901
Gm18585 9 27582837 to 27583392 555 - pseudogene predicted gene, 18585