Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:21624859-21914887

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58 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Smarca4 9 21616169 to 21704230 88061 + protein coding gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
Tssr84032 9 21625656 to 21625662 6 + TSS region transcription start site region 84032
Tssr84033 9 21625944 to 21625959 15 + TSS region transcription start site region 84033
Tssr84034 9 21625983 to 21625994 11 + TSS region transcription start site region 84034
Tssr84035 9 21627377 to 21627381 4 + TSS region transcription start site region 84035
Tssr84036 9 21632791 to 21632798 7 + TSS region transcription start site region 84036
Tssr84037 9 21632990 to 21633021 31 + TSS region transcription start site region 84037
Tssr88406 9 21635833 to 21635870 37 - TSS region transcription start site region 88406
Tssr84038 9 21637272 to 21637310 38 + TSS region transcription start site region 84038
Cpgi21449 9 21639247 to 21639398 151 CpG island CpG island 21449
Tssr84039 9 21640945 to 21640961 16 + TSS region transcription start site region 84039
Tssr84040 9 21660577 to 21660594 17 + TSS region transcription start site region 84040
Tssr84041 9 21660610 to 21660620 10 + TSS region transcription start site region 84041
Tssr84042 9 21670100 to 21670140 40 + TSS region transcription start site region 84042
Gm27373 9 21677913 to 21678096 183 + unclassified non-coding RNA gene predicted gene, 27373
Tssr84043 9 21695621 to 21695625 4 + TSS region transcription start site region 84043
Gm26511 9 21717616 to 21723450 5834 - lincRNA gene predicted gene, 26511
Cpgi21450 9 21723139 to 21724441 1302 CpG island CpG island 21450
Ldlr 9 21723576 to 21749919 26343 + protein coding gene low density lipoprotein receptor
Tssr84044 9 21723604 to 21723615 11 + TSS region transcription start site region 84044
Tssr84045 9 21723624 to 21723657 33 + TSS region transcription start site region 84045
Tssr84046 9 21735667 to 21735674 7 + TSS region transcription start site region 84046
Tssr84047 9 21743998 to 21744013 15 + TSS region transcription start site region 84047
Tssr84048 9 21748429 to 21748448 19 + TSS region transcription start site region 84048
Spc24 9 21755442 to 21760303 4861 - protein coding gene SPC24, NDC80 kinetochore complex component, homolog (S. cerevisiae)
Cpgi21451 9 21759792 to 21760706 914 CpG island CpG island 21451
Tssr88407 9 21760275 to 21760294 19 - TSS region transcription start site region 88407
Tssr88408 9 21760298 to 21760316 18 - TSS region transcription start site region 88408
Kank2 9 21766773 to 21798546 31773 - protein coding gene KN motif and ankyrin repeat domains 2
Cpgi21452 9 21769759 to 21770139 380 CpG island CpG island 21452
Tssr88409 9 21769859 to 21769887 28 - TSS region transcription start site region 88409
Tssr88410 9 21770029 to 21770046 17 - TSS region transcription start site region 88410
Tssr88411 9 21770172 to 21770202 30 - TSS region transcription start site region 88411
Cpgi21453 9 21794578 to 21795602 1024 CpG island CpG island 21453
Tssr88412 9 21794992 to 21794997 5 - TSS region transcription start site region 88412
Tssr88413 9 21795011 to 21795022 11 - TSS region transcription start site region 88413
Tssr88414 9 21795061 to 21795075 14 - TSS region transcription start site region 88414
Cpgi21454 9 21797774 to 21799003 1229 CpG island CpG island 21454
Tssr2804 9 21798062 to 21798078 16 + TSS region transcription start site region 2804
Tssr88415 9 21798502 to 21798561 59 - TSS region transcription start site region 88415
Tssr88416 9 21798694 to 21798755 61 - TSS region transcription start site region 88416
Dock6 9 21800180 to 21852716 52536 - protein coding gene dedicator of cytokinesis 6
Tssr88417 9 21804402 to 21804415 13 - TSS region transcription start site region 88417
Gm39305 9 21805608 to 21809575 3967 + lncRNA gene predicted gene, 39305
Tssr88418 9 21809911 to 21809918 7 - TSS region transcription start site region 88418
Tssr88419 9 21809919 to 21809930 11 - TSS region transcription start site region 88419
Mir7083 9 21809941 to 21810000 59 - miRNA gene microRNA 7083
Tssr84049 9 21826549 to 21826554 5 + TSS region transcription start site region 84049
Tssr84050 9 21835489 to 21835504 15 + TSS region transcription start site region 84050
Tssr84051 9 21835506 to 21835516 10 + TSS region transcription start site region 84051
Angptl8 9 21835510 to 21837347 1837 + protein coding gene angiopoietin-like 8
Tssr84052 9 21835635 to 21835646 11 + TSS region transcription start site region 84052
Tssr84053 9 21848226 to 21848237 11 + TSS region transcription start site region 84053
Cpgi21455 9 21852141 to 21853212 1071 CpG island CpG island 21455
Tssr88420 9 21852603 to 21852644 41 - TSS region transcription start site region 88420
Cpgi21456 9 21870934 to 21871091 157 CpG island CpG island 21456
Gm47873 9 21872274 to 21892189 19915 + pseudogene predicted gene, 47873
Rab3d 9 21907491 to 21918183 10692 - protein coding gene RAB3D, member RAS oncogene family