Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:21336222-21716233

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99 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc44a2 9 21320719 to 21355028 34309 + protein coding gene solute carrier family 44, member 2
Tssr83986 9 21337832 to 21337859 27 + TSS region transcription start site region 83986
Cpgi21441 9 21337869 to 21338095 226 CpG island CpG island 21441
Tssr83987 9 21337870 to 21337877 7 + TSS region transcription start site region 83987
Tssr83988 9 21351965 to 21351969 4 + TSS region transcription start site region 83988
Tssr88396 9 21359424 to 21359426 2 - TSS region transcription start site region 88396
Cpgi21442 9 21367175 to 21368577 1402 CpG island CpG island 21442
Tssr88397 9 21367393 to 21367402 9 - TSS region transcription start site region 88397
Gm36198 9 21367396 to 21369184 1788 - antisense lncRNA gene predicted gene, 36198
Tssr88398 9 21367423 to 21367442 19 - TSS region transcription start site region 88398
Tssr88399 9 21367452 to 21367472 20 - TSS region transcription start site region 88399
Tssr83989 9 21367865 to 21367881 16 + TSS region transcription start site region 83989
Ilf3 9 21367871 to 21405361 37490 + protein coding gene interleukin enhancer binding factor 3
Tssr83990 9 21367890 to 21367970 80 + TSS region transcription start site region 83990
Tssr83991 9 21368014 to 21368027 13 + TSS region transcription start site region 83991
Tssr83992 9 21368047 to 21368061 14 + TSS region transcription start site region 83992
Tssr83993 9 21368495 to 21368505 10 + TSS region transcription start site region 83993
Tssr83994 9 21368507 to 21368524 17 + TSS region transcription start site region 83994
Tssr83995 9 21378106 to 21378115 9 + TSS region transcription start site region 83995
Tssr83996 9 21380610 to 21380613 3 + TSS region transcription start site region 83996
8030498B09Rik 9 21390099 to 21391254 1155 unclassified gene RIKEN cDNA 8030498B09 gene
Gm16853 9 21405242 to 21411720 6478 - antisense lncRNA gene predicted gene, 16853
Cpgi21443 9 21411593 to 21412609 1016 CpG island CpG island 21443
Tssr83997 9 21411824 to 21411853 29 + TSS region transcription start site region 83997
Qtrt1 9 21411837 to 21420274 8437 + protein coding gene queuine tRNA-ribosyltransferase catalytic subunit 1
Tssr88400 9 21412241 to 21412246 5 - TSS region transcription start site region 88400
Cpgi21444 9 21424642 to 21425684 1042 CpG island CpG island 21444
Tssr83998 9 21424901 to 21424981 80 + TSS region transcription start site region 83998
Dnm2 9 21424908 to 21507759 82851 + protein coding gene dynamin 2
Tssr83999 9 21424984 to 21425021 37 + TSS region transcription start site region 83999
Gm46104 9 21465740 to 21467197 1457 + lncRNA gene predicted gene, 46104
Tssr84000 9 21469928 to 21469929 1 + TSS region transcription start site region 84000
Tssr84001 9 21484562 to 21484566 4 + TSS region transcription start site region 84001
Tssr84002 9 21490363 to 21490374 11 + TSS region transcription start site region 84002
Tssr84003 9 21490518 to 21490529 11 + TSS region transcription start site region 84003
Tssr84004 9 21491363 to 21491376 13 + TSS region transcription start site region 84004
Mir199a-1 9 21496495 to 21496564 69 - miRNA gene microRNA 199a-1
Tssr84005 9 21499399 to 21499414 15 + TSS region transcription start site region 84005
Tssr84006 9 21499498 to 21499514 16 + TSS region transcription start site region 84006
Tssr84007 9 21505028 to 21505039 11 + TSS region transcription start site region 84007
Tmed1 9 21507553 to 21510252 2699 - protein coding gene transmembrane p24 trafficking protein 1
Cpgi21445 9 21509855 to 21510709 854 CpG island CpG island 21445
Tssr88401 9 21510181 to 21510203 22 - TSS region transcription start site region 88401
Tssr84008 9 21510592 to 21510626 34 + TSS region transcription start site region 84008
Tssr84009 9 21526144 to 21526207 63 + TSS region transcription start site region 84009
AB124611 9 21526176 to 21545333 19157 + protein coding gene cDNA sequence AB124611
Tssr84010 9 21526222 to 21526233 11 + TSS region transcription start site region 84010
Gm20519 9 21533627 to 21533985 358 - pseudogene predicted gene 20519
Tssr84011 9 21537225 to 21537233 8 + TSS region transcription start site region 84011
Tssr84012 9 21545078 to 21545100 22 + TSS region transcription start site region 84012
Tssr84013 9 21545113 to 21545136 23 + TSS region transcription start site region 84013
Cpgi21446 9 21545851 to 21547811 1960 CpG island CpG island 21446
Tssr84014 9 21546759 to 21546832 73 + TSS region transcription start site region 84014
Tssr84015 9 21546842 to 21546936 94 + TSS region transcription start site region 84015
Carm1 9 21546894 to 21589467 42573 + protein coding gene coactivator-associated arginine methyltransferase 1
Tssr84016 9 21568287 to 21568291 4 + TSS region transcription start site region 84016
Tssr84017 9 21587295 to 21587327 32 + TSS region transcription start site region 84017
Tssr84018 9 21588180 to 21588202 22 + TSS region transcription start site region 84018
Tssr84019 9 21588491 to 21588516 25 + TSS region transcription start site region 84019
Tssr84020 9 21588582 to 21588605 23 + TSS region transcription start site region 84020
Yipf2 9 21588682 to 21592828 4146 - protein coding gene Yip1 domain family, member 2
Tssr84021 9 21588895 to 21588910 15 + TSS region transcription start site region 84021
Tssr84022 9 21589203 to 21589221 18 + TSS region transcription start site region 84022
Tssr84023 9 21589228 to 21589244 16 + TSS region transcription start site region 84023
Cpgi21447 9 21592511 to 21593849 1338 CpG island CpG island 21447
Timm29 9 21592722 to 21595970 3248 + protein coding gene translocase of inner mitochondrial membrane 29
Tssr88402 9 21592733 to 21592795 62 - TSS region transcription start site region 88402
Tssr88403 9 21592805 to 21592846 41 - TSS region transcription start site region 88403
Tssr84024 9 21592885 to 21592898 13 + TSS region transcription start site region 84024
Tssr84025 9 21592905 to 21592963 58 + TSS region transcription start site region 84025
Gm7904 9 21607863 to 21608327 464 - pseudogene predicted gene 7904
D9Ertd12e 9 21608718 to 21608939 221 DNA segment DNA segment, Chr 9, ERATO Doi 12, expressed
Gm39304 9 21612366 to 21616094 3728 - lncRNA gene predicted gene, 39304
Mir1946b 9 21613444 to 21613576 132 - miRNA gene microRNA 1946b
Cpgi21448 9 21615644 to 21616890 1246 CpG island CpG island 21448
Tssr88404 9 21615862 to 21615879 17 - TSS region transcription start site region 88404
Tssr84026 9 21616128 to 21616147 19 + TSS region transcription start site region 84026
Tssr84027 9 21616152 to 21616163 11 + TSS region transcription start site region 84027
Tssr84028 9 21616166 to 21616177 11 + TSS region transcription start site region 84028
Smarca4 9 21616169 to 21704230 88061 + protein coding gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4
Tssr84029 9 21616230 to 21616281 51 + TSS region transcription start site region 84029
Tssr84030 9 21616300 to 21616311 11 + TSS region transcription start site region 84030
Tssr84031 9 21616368 to 21616371 3 + TSS region transcription start site region 84031
Tssr88405 9 21616451 to 21616471 20 - TSS region transcription start site region 88405
Tssr84032 9 21625656 to 21625662 6 + TSS region transcription start site region 84032
Tssr84033 9 21625944 to 21625959 15 + TSS region transcription start site region 84033
Tssr84034 9 21625983 to 21625994 11 + TSS region transcription start site region 84034
Tssr84035 9 21627377 to 21627381 4 + TSS region transcription start site region 84035
Tssr84036 9 21632791 to 21632798 7 + TSS region transcription start site region 84036
Tssr84037 9 21632990 to 21633021 31 + TSS region transcription start site region 84037
Tssr88406 9 21635833 to 21635870 37 - TSS region transcription start site region 88406
Tssr84038 9 21637272 to 21637310 38 + TSS region transcription start site region 84038
Cpgi21449 9 21639247 to 21639398 151 CpG island CpG island 21449
Tssr84039 9 21640945 to 21640961 16 + TSS region transcription start site region 84039
Tssr84040 9 21660577 to 21660594 17 + TSS region transcription start site region 84040
Tssr84041 9 21660610 to 21660620 10 + TSS region transcription start site region 84041
Tssr84042 9 21670100 to 21670140 40 + TSS region transcription start site region 84042
Gm27373 9 21677913 to 21678096 183 + unclassified non-coding RNA gene predicted gene, 27373
Tssr84043 9 21695621 to 21695625 4 + TSS region transcription start site region 84043