Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:15730045-18330896

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65 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Slc36a4 9 15709517 to 15742408 32891 + protein coding gene solute carrier family 36 (proton/amino acid symporter), member 4
Tssr83874 9 15730840 to 15730856 16 + TSS region transcription start site region 83874
Tssr83875 9 15730857 to 15730900 43 + TSS region transcription start site region 83875
Tssr83876 9 15730921 to 15730974 53 + TSS region transcription start site region 83876
Cpgi21374 9 15823070 to 15823253 183 CpG island CpG island 21374
Gm48711 9 15823147 to 15823236 89 + pseudogene predicted gene, 48711
Mtnr1b 9 15862614 to 15874556 11942 - protein coding gene melatonin receptor 1B
Cpgi21375 9 15874171 to 15874829 658 CpG island CpG island 21375
Fat3 9 15910189 to 16501285 591096 - protein coding gene FAT atypical cadherin 3
Tssr88260 9 15914416 to 15914423 7 - TSS region transcription start site region 88260
Cpgi21376 9 15922411 to 15922812 401 CpG island CpG island 21376
Cpgi21377 9 15937899 to 15938329 430 CpG island CpG island 21377
Cpgi21378 9 15978407 to 15978618 211 CpG island CpG island 21378
Tssr88261 9 16034052 to 16034056 4 - TSS region transcription start site region 88261
Tssr83877 9 16114589 to 16114609 20 + TSS region transcription start site region 83877
Tssr88262 9 16186500 to 16186503 3 - TSS region transcription start site region 88262
D230018H15Rik 9 16236361 to 16239631 3270 unclassified gene RIKEN cDNA D230018H15 gene
Tssr88263 9 16252223 to 16252232 9 - TSS region transcription start site region 88263
Tssr88264 9 16310351 to 16310372 21 - TSS region transcription start site region 88264
Tssr88265 9 16339458 to 16339462 4 - TSS region transcription start site region 88265
Gm48726 9 16432867 to 16435395 2528 - unclassified gene predicted gene, 48726
Tssr2787 9 16442380 to 16442384 4 + TSS region transcription start site region 2787
D9Mit1002 9 16460081 to 16460220 139 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 1002
Tssr88266 9 16499258 to 16499260 2 - TSS region transcription start site region 88266
Cpgi21379 9 16499995 to 16500366 371 CpG island CpG island 21379
Cpgi21380 9 16500664 to 16502800 2136 CpG island CpG island 21380
Tssr88267 9 16501985 to 16502089 104 - TSS region transcription start site region 88267
Tssr88268 9 16502170 to 16502181 11 - TSS region transcription start site region 88268
Tssr88269 9 16502195 to 16502209 14 - TSS region transcription start site region 88269
Tssr88270 9 16502222 to 16502238 16 - TSS region transcription start site region 88270
Tssr88271 9 16502430 to 16502441 11 - TSS region transcription start site region 88271
Tssr88272 9 16502493 to 16502505 12 - TSS region transcription start site region 88272
Cpgi21381 9 16548535 to 16548739 204 CpG island CpG island 21381
1700037J18Rik 9 16599379 to 16599801 422 unclassified gene RIKEN cDNA 1700037J18 gene
Gm5611 9 17030045 to 17030896 851 + pseudogene predicted gene 5611
Tssr83878 9 17047229 to 17047254 25 + TSS region transcription start site region 83878
Gm39296 9 17181325 to 17356714 175389 - lncRNA gene predicted gene, 39296
Tssr83879 9 17395298 to 17395302 4 + TSS region transcription start site region 83879
Gm2594 9 17501968 to 17502709 741 - pseudogene predicted gene 2594
D9Mit295 9 17507759 to 17507860 101 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 295
Gm48846 9 17523979 to 17524245 266 + pseudogene predicted gene, 48846
Tssr88273 9 17556293 to 17556307 14 - TSS region transcription start site region 88273
Tssr88274 9 17556316 to 17556327 11 - TSS region transcription start site region 88274
Tssr83880 9 17556471 to 17556493 22 + TSS region transcription start site region 83880
Tssr88275 9 17675670 to 17675695 25 - TSS region transcription start site region 88275
Gm48848 9 17719063 to 17719173 110 + pseudogene predicted gene, 48848
Gm4977 9 17732670 to 17733931 1261 + pseudogene predicted gene 4977
Gm48849 9 17785308 to 17785787 479 - pseudogene predicted gene, 48849
Tssr83881 9 17987790 to 17987813 23 + TSS region transcription start site region 83881
Gm7680 9 18022224 to 18023571 1347 + pseudogene predicted gene 7680
Gm48850 9 18088045 to 18088356 311 + pseudogene predicted gene, 48850
Gm48856 9 18097955 to 18098280 325 + pseudogene predicted gene, 48856
Gm44498 9 18098152 to 18098262 110 - miRNA gene predicted gene, 44498
Tssr83882 9 18195053 to 18195057 4 + TSS region transcription start site region 83882
Gm7692 9 18289452 to 18289860 408 - pseudogene predicted gene 7692
Cpgi21382 9 18291915 to 18292714 799 CpG island CpG island 21382
Tssr83883 9 18292235 to 18292246 11 + TSS region transcription start site region 83883
Chordc1 9 18292267 to 18314000 21733 + protein coding gene cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1
Tssr83884 9 18292271 to 18292334 63 + TSS region transcription start site region 83884
Tssr83885 9 18292344 to 18292360 16 + TSS region transcription start site region 83885
Gm19178 9 18298833 to 18300651 1818 - pseudogene predicted gene, 19178
Tssr88276 9 18299381 to 18299400 19 - TSS region transcription start site region 88276
Tssr83886 9 18312855 to 18312873 18 + TSS region transcription start site region 83886
Naalad2 9 18321954 to 18397354 75400 - protein coding gene N-acetylated alpha-linked acidic dipeptidase 2
D9Ertd720e 9 18322010 to 18322220 210 DNA segment DNA segment, Chr 9, ERATO Doi 720, expressed