MPD: Genes and genomic regions

Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g. 17:44-45 ..or.. X:22500000-23000000

Click here to work with the entire chromosomal region 9:119656640-119936642

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18 genes found.

Gene symbol	Chromo- some	Coordinates (bp, mm10)	Size (bp)	Strand	Feature Type	Gene name
Scn10a	9	119608456 to 119719322	110866	-	protein coding gene	sodium channel, voltage-gated, type X, alpha
Tssr3051	9	119691368 to 119691387	19	+	TSS region	transcription start site region 3051
Gm33701	9	119744216 to 119754451	10235	+	lncRNA gene	predicted gene, 33701
Scn11a	9	119753759 to 119825456	71697	-	protein coding gene	sodium channel, voltage-gated, type XI, alpha
Cpgi22481	9	119791927 to 119792119	192		CpG island	CpG island 22481
Tssr87689	9	119796640 to 119796642	2	+	TSS region	transcription start site region 87689
Cpgi22482	9	119797556 to 119797791	235		CpG island	CpG island 22482
Cpgi22483	9	119828488 to 119828763	275		CpG island	CpG island 22483
Gm46134	9	119882946 to 119887573	4627	-	lncRNA gene	predicted gene, 46134
Gm2449	9	119887575 to 119894912	7337	-	bidirectional promoter lncRNA gene	predicted gene 2449
Cpgi22484	9	119894554 to 119895790	1236		CpG island	CpG island 22484
Tssr87690	9	119894876 to 119894913	37	+	TSS region	transcription start site region 87690
Wdr48	9	119894895 to 119926586	31691	+	protein coding gene	WD repeat domain 48
Tssr87691	9	119895131 to 119895148	17	+	TSS region	transcription start site region 87691
Tssr91989	9	119895137 to 119895141	4	-	TSS region	transcription start site region 91989
Tssr87692	9	119895155 to 119895211	56	+	TSS region	transcription start site region 87692
Gorasp1	9	119925673 to 119937558	11885	-	protein coding gene	golgi reassembly stacking protein 1
D9Mit216	9	119934993 to 119935122	129		DNA segment	DNA segment, Chr 9, Massachusetts Institute of Technology 216