Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:118821553-120061559

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188 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Adip20d 9 108915010 to 118915010 10000000 QTL adiposity 20d
Itga9 9 118606709 to 118901003 294294 + protein coding gene integrin alpha 9
Tssr87654 9 118835492 to 118835506 14 + TSS region transcription start site region 87654
Tssr87655 9 118835521 to 118835558 37 + TSS region transcription start site region 87655
Gm10157 9 118837613 to 118837955 342 - pseudogene predicted gene 10157
Tssr91959 9 118838090 to 118838100 10 - TSS region transcription start site region 91959
Gm39454 9 118843879 to 118851834 7955 - lncRNA gene predicted gene, 39454
Cpgi22462 9 118871947 to 118872159 212 CpG island CpG island 22462
Tssr87656 9 118877132 to 118877145 13 + TSS region transcription start site region 87656
Tssr91960 9 118887216 to 118887229 13 - TSS region transcription start site region 91960
Gm2415 9 118902618 to 118906018 3400 - antisense lncRNA gene predicted gene 2415
Gm16295 9 118924873 to 118925777 904 + lincRNA gene predicted gene 16295
Cpgi22463 9 118925018 to 118927467 2449 CpG island CpG island 22463
Tssr91961 9 118925374 to 118925442 68 - TSS region transcription start site region 91961
Ctdspl 9 118926453 to 119043998 117545 + protein coding gene CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase-like
Tssr87657 9 118926498 to 118926568 70 + TSS region transcription start site region 87657
Tssr87658 9 118926638 to 118926654 16 + TSS region transcription start site region 87658
Tssr3049 9 118926663 to 118926674 11 + TSS region transcription start site region 3049
D9Mit120 9 118937878 to 118938021 143 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 120
Pymr 9 118938021 to 89977005 -28961016 QTL Plasmodium yoelli malaria resistance
Tssr87659 9 118947327 to 118947330 3 + TSS region transcription start site region 87659
Tssr87660 9 118959738 to 118959742 4 + TSS region transcription start site region 87660
Obq18 9 119000187 to 119000307 120 QTL obesity QTL 18
D9Mit281 9 119000187 to 119000307 120 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 281
Tgq2 9 119000187 to 119000307 120 QTL triglyceride QTL 2
D9Mit281.1 9 119000287 to 119000410 123 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 281.1
Gm33645 9 119022850 to 119026266 3416 - lncRNA gene predicted gene, 33645
Mir26a-1 9 119031796 to 119031885 89 + miRNA gene microRNA 26a-1
Tssr87661 9 119035018 to 119035020 2 + TSS region transcription start site region 87661
Tssr87662 9 119037661 to 119037663 2 + TSS region transcription start site region 87662
Tssr87663 9 119052770 to 119052795 25 + TSS region transcription start site region 87663
Vill 9 119052778 to 119071525 18747 + protein coding gene villin-like
Cpgi22464 9 119052862 to 119053253 391 CpG island CpG island 22464
Tssr87664 9 119052863 to 119052893 30 + TSS region transcription start site region 87664
Tssr87665 9 119063429 to 119063467 38 + TSS region transcription start site region 87665
Tssr87666 9 119063468 to 119063492 24 + TSS region transcription start site region 87666
Plcd1 9 119071527 to 119093502 21975 - protein coding gene phospholipase C, delta 1
Cpgi22465 9 119075779 to 119076380 601 CpG island CpG island 22465
Cpgi22466 9 119088023 to 119088250 227 CpG island CpG island 22466
Tssr91962 9 119088207 to 119088280 73 - TSS region transcription start site region 91962
Tssr91963 9 119089317 to 119089321 4 - TSS region transcription start site region 91963
Cpgi22467 9 119092833 to 119093915 1082 CpG island CpG island 22467
Tssr91964 9 119093468 to 119093502 34 - TSS region transcription start site region 91964
Cpgi22468 9 119102301 to 119103117 816 CpG island CpG island 22468
Tssr87667 9 119102463 to 119102530 67 + TSS region transcription start site region 87667
Dlec1 9 119102478 to 119148246 45768 + protein coding gene deleted in lung and esophageal cancer 1
Tssr87668 9 119119625 to 119119658 33 + TSS region transcription start site region 87668
Tssr3050 9 119119660 to 119119666 6 + TSS region transcription start site region 3050
Tssr87669 9 119133587 to 119133615 28 + TSS region transcription start site region 87669
Acaa1b 9 119148043 to 119157093 9050 - protein coding gene acetyl-Coenzyme A acyltransferase 1B
Cpgi22469 9 119156388 to 119157132 744 CpG island CpG island 22469
Tssr91965 9 119157014 to 119157029 15 - TSS region transcription start site region 91965
Tssr91966 9 119157055 to 119157075 20 - TSS region transcription start site region 91966
Gm47289 9 119159161 to 119161669 2508 + protein coding gene predicted gene, 47289
Tssr87670 9 119162620 to 119162643 23 + TSS region transcription start site region 87670
Gm10608 9 119162730 to 119163405 675 + pseudogene predicted gene 10608
Slc22a14 9 119169453 to 119190430 20977 - protein coding gene solute carrier family 22 (organic cation transporter), member 14
Tssr91967 9 119184126 to 119184153 27 - TSS region transcription start site region 91967
Tssr91968 9 119190233 to 119190236 3 - TSS region transcription start site region 91968
Tssr91969 9 119190254 to 119190258 4 - TSS region transcription start site region 91969
Tssr91970 9 119190265 to 119190266 1 - TSS region transcription start site region 91970
Tssr91971 9 119190283 to 119190290 7 - TSS region transcription start site region 91971
Tssr91972 9 119190313 to 119190318 5 - TSS region transcription start site region 91972
Tssr91973 9 119190365 to 119190374 9 - TSS region transcription start site region 91973
Tssr91974 9 119190383 to 119190410 27 - TSS region transcription start site region 91974
Tssr91975 9 119190414 to 119190420 6 - TSS region transcription start site region 91975
Slc22a13 9 119192974 to 119209098 16124 - protein coding gene solute carrier family 22 (organic cation transporter), member 13
Tssr91976 9 119209096 to 119209109 13 - TSS region transcription start site region 91976
Slc22a13b 9 119220491 to 119231692 11201 - polymorphic pseudogene solute carrier family 22 (organic cation transporter), member 13b
Oxsr1 9 119238432 to 119322427 83995 - protein coding gene oxidative-stress responsive 1
Gm22729 9 119306629 to 119306757 128 - snoRNA gene predicted gene, 22729
Cpgi22470 9 119321545 to 119323392 1847 CpG island CpG island 22470
Tssr91977 9 119322330 to 119322358 28 - TSS region transcription start site region 91977
Tssr91978 9 119322376 to 119322417 41 - TSS region transcription start site region 91978
Tssr91979 9 119322421 to 119322449 28 - TSS region transcription start site region 91979
Tssr87671 9 119323047 to 119323064 17 + TSS region transcription start site region 87671
Tssr87672 9 119323139 to 119323153 14 + TSS region transcription start site region 87672
Myd88 9 119335988 to 119340040 4052 - protein coding gene myeloid differentiation primary response gene 88
Cpgi22471 9 119339527 to 119340210 683 CpG island CpG island 22471
Tssr87673 9 119339648 to 119339661 13 + TSS region transcription start site region 87673
Tssr91980 9 119339849 to 119339860 11 - TSS region transcription start site region 91980
Tssr91981 9 119339989 to 119340035 46 - TSS region transcription start site region 91981
Cpgi22472 9 119340898 to 119342030 1132 CpG island CpG island 22472
Acaa1a 9 119341052 to 119350296 9244 + protein coding gene acetyl-Coenzyme A acyltransferase 1A
Tssr87674 9 119341348 to 119341363 15 + TSS region transcription start site region 87674
Tssr87675 9 119341366 to 119341409 43 + TSS region transcription start site region 87675
Tssr91982 9 119341390 to 119341420 30 - TSS region transcription start site region 91982
Tssr87676 9 119341419 to 119341486 67 + TSS region transcription start site region 87676
Tssr87677 9 119341487 to 119341499 12 + TSS region transcription start site region 87677
Cpgi22473 9 119357343 to 119358187 844 CpG island CpG island 22473
Xylb 9 119357381 to 119393797 36416 + protein coding gene xylulokinase homolog (H. influenzae)
Tssr87678 9 119357543 to 119357564 21 + TSS region transcription start site region 87678
Tssr87679 9 119357574 to 119357604 30 + TSS region transcription start site region 87679
Tssr87680 9 119392021 to 119392034 13 + TSS region transcription start site region 87680
Tssr87681 9 119392235 to 119392265 30 + TSS region transcription start site region 87681
Cpgi22474 9 119401602 to 119403644 2042 CpG island CpG island 22474
Tssr87682 9 119402081 to 119402153 72 + TSS region transcription start site region 87682
Acvr2b 9 119402118 to 119434995 32877 + protein coding gene activin receptor IIB
Tssr87683 9 119402156 to 119402225 69 + TSS region transcription start site region 87683
Tssr87684 9 119402226 to 119402269 43 + TSS region transcription start site region 87684
Tssr91983 9 119403475 to 119403486 11 - TSS region transcription start site region 91983
Gm47320 9 119405108 to 119409016 3908 - antisense lncRNA gene predicted gene, 47320
Tssr87685 9 119408791 to 119408795 4 + TSS region transcription start site region 87685
Tssr87686 9 119434754 to 119434758 4 + TSS region transcription start site region 87686
4930516B21Rik 9 119440278 to 119444830 4552 - lincRNA gene RIKEN cDNA 4930516B21 gene
Tssr87687 9 119441553 to 119441559 6 + TSS region transcription start site region 87687
Cpgi22475 9 119444671 to 119445576 905 CpG island CpG island 22475
Exog 9 119444943 to 119465517 20574 + protein coding gene endo/exonuclease (5'-3'), endonuclease G-like
Tssr87688 9 119444952 to 119444982 30 + TSS region transcription start site region 87688
Scn5a 9 119483408 to 119579016 95608 - protein coding gene sodium channel, voltage-gated, type V, alpha
D9Mit82 9 119496744 to 119496894 150 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 82
D9Dcr134 9 119496776 to 119496879 103 DNA segment DNA segment, Chr 9, Derry C. Roopenian 134
Tssr91984 9 119510805 to 119510809 4 - TSS region transcription start site region 91984
Cpgi22476 9 119517425 to 119517687 262 CpG island CpG island 22476
Cpgi22477 9 119519198 to 119519436 238 CpG island CpG island 22477
Tssr91985 9 119564692 to 119564705 13 - TSS region transcription start site region 91985
Tssr91986 9 119564747 to 119564756 9 - TSS region transcription start site region 91986
Cpgi22478 9 119578060 to 119579591 1531 CpG island CpG island 22478
Tssr91987 9 119578981 to 119579031 50 - TSS region transcription start site region 91987
Tssr91988 9 119579040 to 119579051 11 - TSS region transcription start site region 91988
Cpgi22479 9 119580295 to 119580468 173 CpG island CpG island 22479
Cpgi22480 9 119589019 to 119589293 274 CpG island CpG island 22480
Scn10a 9 119608456 to 119719322 110866 - protein coding gene sodium channel, voltage-gated, type X, alpha
Tssr3051 9 119691368 to 119691387 19 + TSS region transcription start site region 3051
Gm33701 9 119744216 to 119754451 10235 + lncRNA gene predicted gene, 33701
Scn11a 9 119753759 to 119825456 71697 - protein coding gene sodium channel, voltage-gated, type XI, alpha
Cpgi22481 9 119791927 to 119792119 192 CpG island CpG island 22481
Tssr87689 9 119796640 to 119796642 2 + TSS region transcription start site region 87689
Cpgi22482 9 119797556 to 119797791 235 CpG island CpG island 22482
Cpgi22483 9 119828488 to 119828763 275 CpG island CpG island 22483
Gm46134 9 119882946 to 119887573 4627 - lncRNA gene predicted gene, 46134
Gm2449 9 119887575 to 119894912 7337 - bidirectional promoter lncRNA gene predicted gene 2449
Cpgi22484 9 119894554 to 119895790 1236 CpG island CpG island 22484
Tssr87690 9 119894876 to 119894913 37 + TSS region transcription start site region 87690
Wdr48 9 119894895 to 119926586 31691 + protein coding gene WD repeat domain 48
Tssr87691 9 119895131 to 119895148 17 + TSS region transcription start site region 87691
Tssr91989 9 119895137 to 119895141 4 - TSS region transcription start site region 91989
Tssr87692 9 119895155 to 119895211 56 + TSS region transcription start site region 87692
Gorasp1 9 119925673 to 119937558 11885 - protein coding gene golgi reassembly stacking protein 1
D9Mit216 9 119934993 to 119935122 129 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 216
Cpgi22485 9 119937345 to 119937859 514 CpG island CpG island 22485
Tssr91990 9 119937514 to 119937558 44 - TSS region transcription start site region 91990
Ttc21a 9 119937606 to 119967793 30187 + protein coding gene tetratricopeptide repeat domain 21A
Tssr87693 9 119937612 to 119937651 39 + TSS region transcription start site region 87693
Tssr87694 9 119937654 to 119937705 51 + TSS region transcription start site region 87694
Cpgi22486 9 119963011 to 119963317 306 CpG island CpG island 22486
Csrnp1 9 119971163 to 119984658 13495 - protein coding gene cysteine-serine-rich nuclear protein 1
Cpgi22487 9 119974119 to 119974446 327 CpG island CpG island 22487
Tssr91991 9 119976053 to 119976080 27 - TSS region transcription start site region 91991
Tssr91992 9 119977612 to 119977624 12 - TSS region transcription start site region 91992
Tssr91993 9 119978267 to 119978277 10 - TSS region transcription start site region 91993
Tssr91994 9 119978288 to 119978300 12 - TSS region transcription start site region 91994
Tssr91995 9 119980471 to 119980475 4 - TSS region transcription start site region 91995
Tssr91996 9 119981364 to 119981379 15 - TSS region transcription start site region 91996
Tssr87695 9 119981645 to 119981655 10 + TSS region transcription start site region 87695
Cpgi22488 9 119982657 to 119984445 1788 CpG island CpG island 22488
Tssr87696 9 119982732 to 119982744 12 + TSS region transcription start site region 87696
Tssr91997 9 119982860 to 119982869 9 - TSS region transcription start site region 91997
Tssr91998 9 119982981 to 119983003 22 - TSS region transcription start site region 91998
Tssr91999 9 119983005 to 119983040 35 - TSS region transcription start site region 91999
Tssr87697 9 119983124 to 119983131 7 + TSS region transcription start site region 87697
Tssr87698 9 119983133 to 119983168 35 + TSS region transcription start site region 87698
1700019L13Rik 9 119983146 to 119988092 4946 + antisense lncRNA gene RIKEN cDNA 1700019L13 gene
Tssr92000 9 119983733 to 119983748 15 - TSS region transcription start site region 92000
Tssr92001 9 119983762 to 119983780 18 - TSS region transcription start site region 92001
Tssr87699 9 119983908 to 119983974 66 + TSS region transcription start site region 87699
Tssr87700 9 119983976 to 119983987 11 + TSS region transcription start site region 87700
Cpgi22489 9 119984515 to 119984713 198 CpG island CpG island 22489
Tssr92002 9 119984624 to 119984629 5 - TSS region transcription start site region 92002
Tssr92003 9 119984664 to 119984684 20 - TSS region transcription start site region 92003
Gm33800 9 119985406 to 120012150 26744 + lncRNA gene predicted gene, 33800
Cpgi22490 9 120002119 to 120002324 205 CpG island CpG island 22490
Tssr87701 9 120002345 to 120002357 12 + TSS region transcription start site region 87701
Tssr87702 9 120002372 to 120002386 14 + TSS region transcription start site region 87702
Gm47043 9 120004037 to 120005106 1069 + lincRNA gene predicted gene, 47043
Tssr3052 9 120004842 to 120004853 11 + TSS region transcription start site region 3052
Tssr92004 9 120009184 to 120009190 6 - TSS region transcription start site region 92004
Gm49427 9 120009805 to 120011448 1643 + lincRNA gene predicted gene, 49427
Cpgi22491 9 120010924 to 120011680 756 CpG island CpG island 22491
Tssr92005 9 120011191 to 120011233 42 - TSS region transcription start site region 92005
Tssr92006 9 120012757 to 120012770 13 - TSS region transcription start site region 92006
Tssr92007 9 120012836 to 120012846 10 - TSS region transcription start site region 92007
Tssr92008 9 120012860 to 120012879 19 - TSS region transcription start site region 92008
Tssr87703 9 120013042 to 120013077 35 + TSS region transcription start site region 87703
Xirp1 9 120013755 to 120023598 9843 - protein coding gene xin actin-binding repeat containing 1
Tssr92009 9 120023558 to 120023574 16 - TSS region transcription start site region 92009
Cx3cr1 9 120048683 to 120068296 19613 - protein coding gene chemokine (C-X3-C motif) receptor 1
Tssr92010 9 120056322 to 120056327 5 - TSS region transcription start site region 92010