Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:114498972-117938977

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266 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ccr4 9 114490316 to 114504916 14600 - protein coding gene chemokine (C-C motif) receptor 4
Tssr91841 9 114501213 to 114501254 41 - TSS region transcription start site region 91841
Trim71 9 114511268 to 114564369 53101 - protein coding gene tripartite motif-containing 71
Tssr91842 9 114512439 to 114512443 4 - TSS region transcription start site region 91842
C130032M10Rik 9 114515697 to 114516424 727 + protein coding gene RIKEN cDNA C130032M10 gene
Tssr87567 9 114515713 to 114515750 37 + TSS region transcription start site region 87567
Tssr91843 9 114520614 to 114520620 6 - TSS region transcription start site region 91843
Cpgi22423 9 114560941 to 114561701 760 CpG island CpG island 22423
Cpgi22424 9 114562125 to 114564585 2460 CpG island CpG island 22424
Tssr91844 9 114563242 to 114563253 11 - TSS region transcription start site region 91844
Tssr91845 9 114563269 to 114563283 14 - TSS region transcription start site region 91845
Tssr91846 9 114563287 to 114563303 16 - TSS region transcription start site region 91846
Tssr91847 9 114564086 to 114564103 17 - TSS region transcription start site region 91847
Tssr91848 9 114564197 to 114564209 12 - TSS region transcription start site region 91848
Tssr91849 9 114564288 to 114564295 7 - TSS region transcription start site region 91849
Tssr91850 9 114564315 to 114564334 19 - TSS region transcription start site region 91850
Tssr91851 9 114564338 to 114564349 11 - TSS region transcription start site region 91851
Cpgi22425 9 114579399 to 114579592 193 CpG island CpG island 22425
Cpgi22426 9 114579908 to 114580217 309 CpG island CpG island 22426
Cpgi22427 9 114583828 to 114584195 367 CpG island CpG island 22427
Tssr91852 9 114584262 to 114584275 13 - TSS region transcription start site region 91852
Cnot10 9 114585878 to 114640184 54306 - protein coding gene CCR4-NOT transcription complex, subunit 10
Gm23232 9 114602088 to 114602192 104 - snRNA gene predicted gene, 23232
Cpgi22428 9 114639459 to 114640332 873 CpG island CpG island 22428
Tssr91853 9 114640027 to 114640047 20 - TSS region transcription start site region 91853
Tssr91854 9 114640052 to 114640113 61 - TSS region transcription start site region 91854
Tssr91855 9 114640124 to 114640135 11 - TSS region transcription start site region 91855
Tssr91856 9 114640155 to 114640167 12 - TSS region transcription start site region 91856
Tssr91857 9 114640175 to 114640218 43 - TSS region transcription start site region 91857
Gm7780 9 114647630 to 114648035 405 - pseudogene predicted gene 7780
Cpgi22429 9 114651019 to 114651309 290 CpG island CpG island 22429
D9Mit1000 9 114678896 to 114679119 223 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 1000
Cpgi22430 9 114688192 to 114689693 1501 CpG island CpG island 22430
Tssr91858 9 114688633 to 114688663 30 - TSS region transcription start site region 91858
Tssr87568 9 114688729 to 114688740 11 + TSS region transcription start site region 87568
Tssr87569 9 114688744 to 114688778 34 + TSS region transcription start site region 87569
Tssr87570 9 114688782 to 114688813 31 + TSS region transcription start site region 87570
Tssr87571 9 114688814 to 114688819 5 + TSS region transcription start site region 87571
Tssr87572 9 114688820 to 114688833 13 + TSS region transcription start site region 87572
Dync1li1 9 114688831 to 114723788 34957 + protein coding gene dynein cytoplasmic 1 light intermediate chain 1
Tssr87573 9 114688836 to 114688846 10 + TSS region transcription start site region 87573
Tssr87574 9 114688851 to 114688865 14 + TSS region transcription start site region 87574
Tssr87575 9 114688866 to 114688877 11 + TSS region transcription start site region 87575
Tssr87576 9 114689879 to 114689884 5 + TSS region transcription start site region 87576
Tssr87577 9 114722310 to 114722315 5 + TSS region transcription start site region 87577
Tssr87578 9 114723505 to 114723520 15 + TSS region transcription start site region 87578
Cpgi22431 9 114730986 to 114731618 632 CpG island CpG island 22431
Cmtm6 9 114731157 to 114749347 18190 + protein coding gene CKLF-like MARVEL transmembrane domain containing 6
Tssr87579 9 114731177 to 114731234 57 + TSS region transcription start site region 87579
Ierepo2 9 114736397 to 114736826 429 unclassified gene immediate early response, erythropoietin 2
Cpgi22432 9 114752787 to 114753458 671 CpG island CpG island 22432
Tssr87580 9 114756833 to 114756842 9 + TSS region transcription start site region 87580
Cmtm7 9 114756836 to 114781856 25020 - protein coding gene CKLF-like MARVEL transmembrane domain containing 7
Cpgi22433 9 114763195 to 114763459 264 CpG island CpG island 22433
D9Mit81 9 114766805 to 114766971 166 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 81
Tssr91859 9 114774754 to 114774758 4 - TSS region transcription start site region 91859
Tssr91860 9 114775381 to 114775392 11 - TSS region transcription start site region 91860
Tssr91861 9 114775414 to 114775425 11 - TSS region transcription start site region 91861
Tssr91862 9 114775426 to 114775437 11 - TSS region transcription start site region 91862
Tssr91863 9 114775443 to 114775458 15 - TSS region transcription start site region 91863
Tssr91864 9 114775463 to 114775483 20 - TSS region transcription start site region 91864
Tssr91865 9 114775488 to 114775502 14 - TSS region transcription start site region 91865
Tssr91866 9 114778787 to 114778808 21 - TSS region transcription start site region 91866
Tssr91867 9 114778818 to 114778832 14 - TSS region transcription start site region 91867
Tssr91868 9 114778922 to 114778926 4 - TSS region transcription start site region 91868
Tssr91869 9 114778974 to 114778989 15 - TSS region transcription start site region 91869
Tssr91870 9 114779255 to 114779261 6 - TSS region transcription start site region 91870
Gm9888 9 114780100 to 114782257 2157 + antisense lncRNA gene predicted gene 9888
Tssr87581 9 114781086 to 114781125 39 + TSS region transcription start site region 87581
Cpgi22434 9 114781174 to 114782260 1086 CpG island CpG island 22434
Tssr91871 9 114781360 to 114781381 21 - TSS region transcription start site region 91871
Tssr91872 9 114781385 to 114781408 23 - TSS region transcription start site region 91872
Tssr91873 9 114781790 to 114781799 9 - TSS region transcription start site region 91873
Tssr91874 9 114781811 to 114781887 76 - TSS region transcription start site region 91874
Tssr91875 9 114781945 to 114781956 11 - TSS region transcription start site region 91875
Tssr91876 9 114781986 to 114781998 12 - TSS region transcription start site region 91876
Cmtm8 9 114789343 to 114844152 54809 - protein coding gene CKLF-like MARVEL transmembrane domain containing 8
Tssr91877 9 114819033 to 114819042 9 - TSS region transcription start site region 91877
Tssr91878 9 114819077 to 114819086 9 - TSS region transcription start site region 91878
D9Mit55 9 114820285 to 114820396 111 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 55
Gm23889 9 114838173 to 114838276 103 + snRNA gene predicted gene, 23889
Cpgi22435 9 114843559 to 114844760 1201 CpG island CpG island 22435
Tssr91879 9 114844090 to 114844171 81 - TSS region transcription start site region 91879
Tssr91880 9 114844728 to 114844734 6 - TSS region transcription start site region 91880
Gm30448 9 114846988 to 114853663 6675 - lncRNA gene predicted gene, 30448
Gpd1l 9 114899341 to 114933987 34646 - protein coding gene glycerol-3-phosphate dehydrogenase 1-like
Tssr91881 9 114902334 to 114902340 6 - TSS region transcription start site region 91881
D9Mit16 9 114902536 to 114902713 177 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 16
Cpgi22436 9 114904779 to 114905031 252 CpG island CpG island 22436
D9Mit125 9 114929102 to 114929213 111 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 125
Cpgi22437 9 114933084 to 114934205 1121 CpG island CpG island 22437
Gm10609 9 114933424 to 114935989 2565 protein coding gene predicted gene 10609
Tssr91882 9 114933586 to 114933646 60 - TSS region transcription start site region 91882
Tssr91883 9 114933811 to 114933890 79 - TSS region transcription start site region 91883
Tssr91884 9 114933929 to 114933999 70 - TSS region transcription start site region 91884
Cpgi22438 9 114977748 to 114979437 1689 CpG island CpG island 22438
Tssr87582 9 114978433 to 114978461 28 + TSS region transcription start site region 87582
Tssr87583 9 114978479 to 114978506 27 + TSS region transcription start site region 87583
Tssr87584 9 114978507 to 114978550 43 + TSS region transcription start site region 87584
Osbpl10 9 114978569 to 115232225 253656 + protein coding gene oxysterol binding protein-like 10
Rps27rt 9 114982366 to 114982739 373 - protein coding gene ribosomal protein S27, retrogene
Tssr91885 9 114982739 to 114982742 3 - TSS region transcription start site region 91885
Tssr91886 9 114986705 to 114986707 2 - TSS region transcription start site region 91886
Tssr87585 9 114998944 to 114998990 46 + TSS region transcription start site region 87585
Tssr91887 9 115035025 to 115035031 6 - TSS region transcription start site region 91887
Tssr87586 9 115039529 to 115039534 5 + TSS region transcription start site region 87586
Tssr87587 9 115088834 to 115088847 13 + TSS region transcription start site region 87587
D9Dcr125 9 115121857 to 115121969 112 DNA segment DNA segment, Chr 9, Derry C. Roopenian 125
Cpgi22439 9 115150422 to 115150890 468 CpG island CpG island 22439
Cpgi22440 9 115151492 to 115151657 165 CpG island CpG island 22440
Tssr87588 9 115167243 to 115167245 2 + TSS region transcription start site region 87588
Gm4665 9 115180404 to 115186058 5654 - antisense lncRNA gene predicted gene 4665
Tssr91888 9 115186038 to 115186071 33 - TSS region transcription start site region 91888
Tssr3048 9 115186199 to 115186230 31 + TSS region transcription start site region 3048
Gm26962 9 115195453 to 115196898 1445 - antisense lncRNA gene predicted gene, 26962
Tssr87589 9 115200395 to 115200438 43 + TSS region transcription start site region 87589
Gm27002 9 115200398 to 115203875 3477 + sense intronic lncRNA gene predicted gene, 27002
Tssr87590 9 115200885 to 115200889 4 + TSS region transcription start site region 87590
Tssr87591 9 115216504 to 115216531 27 + TSS region transcription start site region 87591
Cpgi22441 9 115216550 to 115216751 201 CpG island CpG island 22441
2210411A11Rik 9 115232725 to 115233757 1032 unclassified gene RIKEN cDNA 2210411A11 gene
Stt3b 9 115242581 to 115310421 67840 - protein coding gene STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)
Tssr91889 9 115243712 to 115243728 16 - TSS region transcription start site region 91889
Stmn1-rs1 9 115281520 to 115281981 461 - pseudogene stathmin 1, related sequence 1
Tssr91890 9 115282066 to 115282075 9 - TSS region transcription start site region 91890
Tssr91891 9 115293446 to 115293451 5 - TSS region transcription start site region 91891
Tssr91892 9 115298122 to 115298125 3 - TSS region transcription start site region 91892
Cpgi22442 9 115309254 to 115311128 1874 CpG island CpG island 22442
Gm9757 9 115309820 to 115312072 2252 unclassified gene predicted gene 9757
Tssr91893 9 115310057 to 115310065 8 - TSS region transcription start site region 91893
Tssr91894 9 115310072 to 115310094 22 - TSS region transcription start site region 91894
Tssr91895 9 115310100 to 115310157 57 - TSS region transcription start site region 91895
Tssr91896 9 115310165 to 115310181 16 - TSS region transcription start site region 91896
Tssr91897 9 115310239 to 115310250 11 - TSS region transcription start site region 91897
Tssr91898 9 115310285 to 115310296 11 - TSS region transcription start site region 91898
Tssr91899 9 115310400 to 115310407 7 - TSS region transcription start site region 91899
Tssr91900 9 115310425 to 115310447 22 - TSS region transcription start site region 91900
Tssr91901 9 115310459 to 115310484 25 - TSS region transcription start site region 91901
Tssr91902 9 115310511 to 115310520 9 - TSS region transcription start site region 91902
Tssr91903 9 115310538 to 115310549 11 - TSS region transcription start site region 91903
Tssr91904 9 115310564 to 115310570 6 - TSS region transcription start site region 91904
Tssr91905 9 115310864 to 115310877 13 - TSS region transcription start site region 91905
Tssr87592 9 115311166 to 115311169 3 + TSS region transcription start site region 87592
4930428G15Rik 9 115336161 to 115341924 5763 + lncRNA gene RIKEN cDNA 4930428G15 gene
Gm30762 9 115347699 to 115370698 22999 + lncRNA gene predicted gene, 30762
Mir467h 9 115381819 to 115381939 120 + miRNA gene microRNA 467h
Gm26303 9 115381960 to 115382078 118 + miRNA gene predicted gene, 26303
Gm25510 9 115382099 to 115382221 122 + miRNA gene predicted gene, 25510
Gm40581 9 115391580 to 115394060 2480 - lncRNA gene predicted gene, 40581
D9Dcr126 9 115398712 to 115398840 128 DNA segment DNA segment, Chr 9, Derry C. Roopenian 126
D9Mit214 9 115398712 to 115398849 137 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 214
Gm40587 9 115399907 to 115400651 744 + protein coding gene predicted gene, 40587
Gm9487 9 115405149 to 115405620 471 + pseudogene predicted gene 9487
Gm22243 9 115411234 to 115411353 119 - miRNA gene predicted gene, 22243
Gm5921 9 115437700 to 115438581 881 - pseudogene predicted gene 5921
Tssr91906 9 115438605 to 115438606 1 - TSS region transcription start site region 91906
Gm39447 9 115450495 to 115539794 89299 + lncRNA gene predicted gene, 39447
Tssr91907 9 115458292 to 115458297 5 - TSS region transcription start site region 91907
Tssr91908 9 115471686 to 115471706 20 - TSS region transcription start site region 91908
Tssr91909 9 115499641 to 115499659 18 - TSS region transcription start site region 91909
D9Mit150 9 115532481 to 115532593 112 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 150
Cpgi22443 9 115550908 to 115551233 325 CpG island CpG island 22443
D9Mit118 9 115604940 to 115605016 76 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 118
Tssr91910 9 115609742 to 115609746 4 - TSS region transcription start site region 91910
Tssr91911 9 115611764 to 115611775 11 - TSS region transcription start site region 91911
n-R5s92 9 115626600 to 115626718 118 - rRNA gene nuclear encoded rRNA 5S 92
Gm39448 9 115630571 to 115658857 28286 - lncRNA gene predicted gene, 39448
D9Mit117 9 115658261 to 115658485 224 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 117
D330037F02Rik 9 115665914 to 115674353 8439 + lncRNA gene RIKEN cDNA D330037F02 gene
Gm48007 9 115680743 to 115682263 1520 + lincRNA gene predicted gene, 48007
D9Dcr127 9 115718757 to 115718867 110 DNA segment DNA segment, Chr 9, Derry C. Roopenian 127
D9Dcr128 9 115800136 to 115800240 104 DNA segment DNA segment, Chr 9, Derry C. Roopenian 128
Tssr87593 9 115908472 to 115908497 25 + TSS region transcription start site region 87593
Gadl1 9 115909455 to 116076176 166721 + protein coding gene glutamate decarboxylase-like 1
Gm31234 9 115951107 to 115977967 26860 - lncRNA gene predicted gene, 31234
Cpgi22444 9 115954951 to 115955254 303 CpG island CpG island 22444
Gm16142 9 115990956 to 116001788 10832 - antisense lncRNA gene predicted gene 16142
Gm9385 9 116040593 to 116041064 471 - pseudogene predicted pseudogene 9385
Tssr91912 9 116041065 to 116041099 34 - TSS region transcription start site region 91912
4930465K12Rik 9 116047666 to 116050865 3199 unclassified gene RIKEN cDNA 4930465K12 gene
Gm31014 9 116051726 to 116054478 2752 - lncRNA gene predicted gene, 31014
Cpgi22445 9 116064785 to 116065126 341 CpG island CpG island 22445
D9Mit215 9 116072984 to 116073102 118 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 215
Gm18328 9 116079689 to 116080464 775 - pseudogene predicted gene, 18328
Cpgi22446 9 116084904 to 116085113 209 CpG island CpG island 22446
Tgfbr2 9 116087695 to 116175363 87668 - protein coding gene transforming growth factor, beta receptor II
Tssr91913 9 116089547 to 116089566 19 - TSS region transcription start site region 91913
Tssr91914 9 116090167 to 116090178 11 - TSS region transcription start site region 91914
Gm31292 9 116142106 to 116151166 9060 + lncRNA gene predicted gene, 31292
Tssr87594 9 116145441 to 116145468 27 + TSS region transcription start site region 87594
D730035F11Rik 9 116161298 to 116165100 3802 unclassified gene RIKEN cDNA D730035F11 gene
Tssr91915 9 116170395 to 116170400 5 - TSS region transcription start site region 91915
Tssr91916 9 116173102 to 116173106 4 - TSS region transcription start site region 91916
Cpgi22447 9 116174406 to 116175585 1179 CpG island CpG island 22447
Tssr91917 9 116175140 to 116175153 13 - TSS region transcription start site region 91917
Tssr91918 9 116175176 to 116175185 9 - TSS region transcription start site region 91918
Tssr91919 9 116175197 to 116175261 64 - TSS region transcription start site region 91919
Tssr91920 9 116175266 to 116175305 39 - TSS region transcription start site region 91920
Tssr87595 9 116175288 to 116175297 9 + TSS region transcription start site region 87595
Tssr91921 9 116175318 to 116175329 11 - TSS region transcription start site region 91921