Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:113692547-113932621

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36 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pdcd6ip 9 113651744 to 113708259 56515 - protein coding gene programmed cell death 6 interacting protein
Cpgi22410 9 113707655 to 113708528 873 CpG island CpG island 22410
Tssr91826 9 113707677 to 113707701 24 - TSS region transcription start site region 91826
Tssr91827 9 113708181 to 113708197 16 - TSS region transcription start site region 91827
Tssr91828 9 113708209 to 113708258 49 - TSS region transcription start site region 91828
4933411B09Rik 9 113708852 to 113710291 1439 unclassified gene RIKEN cDNA 4933411B09 gene
Gm38623 9 113719250 to 113741054 21804 + lncRNA gene predicted gene, 38623
Tssr87524 9 113726414 to 113726420 6 + TSS region transcription start site region 87524
Cpgi22411 9 113740983 to 113742605 1622 CpG island CpG island 22411
Tssr87525 9 113741439 to 113741483 44 + TSS region transcription start site region 87525
Clasp2 9 113741473 to 113919682 178209 + protein coding gene CLIP associating protein 2
Tssr3044 9 113741519 to 113741524 5 + TSS region transcription start site region 3044
Tssr87526 9 113756340 to 113756353 13 + TSS region transcription start site region 87526
Tssr87527 9 113756391 to 113756447 56 + TSS region transcription start site region 87527
Tssr87528 9 113756724 to 113756751 27 + TSS region transcription start site region 87528
Tssr87529 9 113756825 to 113756844 19 + TSS region transcription start site region 87529
Gm25059 9 113776182 to 113776298 116 - snoRNA gene predicted gene, 25059
Tssr87530 9 113792735 to 113792752 17 + TSS region transcription start site region 87530
Tssr87531 9 113792831 to 113792842 11 + TSS region transcription start site region 87531
Tssr87532 9 113792981 to 113792992 11 + TSS region transcription start site region 87532
Tssr87533 9 113793028 to 113793069 41 + TSS region transcription start site region 87533
Tssr3045 9 113793294 to 113793301 7 + TSS region transcription start site region 3045
Tssr87534 9 113793316 to 113793340 24 + TSS region transcription start site region 87534
Tssr87535 9 113793347 to 113793358 11 + TSS region transcription start site region 87535
Tssr87536 9 113803381 to 113803403 22 + TSS region transcription start site region 87536
Tssr87537 9 113812547 to 113812621 74 + TSS region transcription start site region 87537
D9Mit246 9 113903371 to 113903508 137 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 246
Cnes5 9 113917590 to 113917590 0 QTL C. neoformans susceptibility locus 5
Tssr87538 9 113919357 to 113919361 4 + TSS region transcription start site region 87538
Gm39439 9 113920602 to 113930840 10238 - lncRNA gene predicted gene, 39439
Cpgi22412 9 113930612 to 113932076 1464 CpG island CpG island 22412
Ubp1 9 113930934 to 113977202 46268 + protein coding gene upstream binding protein 1
Tssr87539 9 113930964 to 113930987 23 + TSS region transcription start site region 87539
Tssr87540 9 113930990 to 113931066 76 + TSS region transcription start site region 87540
Tssr87541 9 113931138 to 113931188 50 + TSS region transcription start site region 87541
Tssr87542 9 113931308 to 113931317 9 + TSS region transcription start site region 87542