Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:111151544-113281563

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199 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lrrfip2 9 111117592 to 111225668 108076 + protein coding gene leucine rich repeat (in FLII) interacting protein 2
Tssr87485 9 111152095 to 111152096 1 + TSS region transcription start site region 87485
Tssr87486 9 111168741 to 111168751 10 + TSS region transcription start site region 87486
Tssr87487 9 111174210 to 111174219 9 + TSS region transcription start site region 87487
Tssr87488 9 111182300 to 111182306 6 + TSS region transcription start site region 87488
Tssr87489 9 111182320 to 111182336 16 + TSS region transcription start site region 87489
Tssr87490 9 111185185 to 111185197 12 + TSS region transcription start site region 87490
Tssr87491 9 111205742 to 111205749 7 + TSS region transcription start site region 87491
Tssr87492 9 111205763 to 111205780 17 + TSS region transcription start site region 87492
Tssr87493 9 111211412 to 111211416 4 + TSS region transcription start site region 87493
Tssr3041 9 111216718 to 111216722 4 + TSS region transcription start site region 3041
Tssr87494 9 111224579 to 111224585 6 + TSS region transcription start site region 87494
Mlh1 9 111228228 to 111271786 43558 - protein coding gene mutL homolog 1
Gm24860 9 111244592 to 111244867 275 - unclassified non-coding RNA gene predicted gene, 24860
Cpgi22401 9 111271016 to 111272743 1727 CpG island CpG island 22401
Tssr91714 9 111271522 to 111271562 40 - TSS region transcription start site region 91714
Tssr91715 9 111271568 to 111271591 23 - TSS region transcription start site region 91715
Tssr87495 9 111271812 to 111271823 11 + TSS region transcription start site region 87495
Tssr87496 9 111271832 to 111271914 82 + TSS region transcription start site region 87496
Tssr87497 9 111271920 to 111271943 23 + TSS region transcription start site region 87497
Epm2aip1 9 111271929 to 111279093 7164 + protein coding gene EPM2A (laforin) interacting protein 1
Tssr87498 9 111271950 to 111271963 13 + TSS region transcription start site region 87498
Tssr87499 9 111275749 to 111275770 21 + TSS region transcription start site region 87499
Tssr87500 9 111289898 to 111289907 9 + TSS region transcription start site region 87500
Cpgi22402 9 111289930 to 111290319 389 CpG island CpG island 22402
Gm40580 9 111292394 to 111293173 779 - lncRNA gene predicted gene, 40580
Cpgi22403 9 111311096 to 111313067 1971 CpG island CpG island 22403
Tssr87501 9 111311539 to 111311551 12 + TSS region transcription start site region 87501
Tssr87502 9 111311567 to 111311586 19 + TSS region transcription start site region 87502
Tssr87503 9 111311674 to 111311758 84 + TSS region transcription start site region 87503
Trank1 9 111311739 to 111395775 84036 + protein coding gene tetratricopeptide repeat and ankyrin repeat containing 1
Tssr87504 9 111311770 to 111311796 26 + TSS region transcription start site region 87504
Tssr87505 9 111311804 to 111311840 36 + TSS region transcription start site region 87505
Tssr87506 9 111312108 to 111312121 13 + TSS region transcription start site region 87506
Tssr87507 9 111351851 to 111351870 19 + TSS region transcription start site region 87507
Tssr87508 9 111351872 to 111351897 25 + TSS region transcription start site region 87508
Tssr87509 9 111351909 to 111351922 13 + TSS region transcription start site region 87509
Tssr87510 9 111351961 to 111351970 9 + TSS region transcription start site region 87510
D9Mit350 9 111360411 to 111360536 125 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 350
D9Dcr119 9 111360416 to 111360516 100 DNA segment DNA segment, Chr 9, Derry C. Roopenian 119
D9Dcr120 9 111407230 to 111407325 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 120
D9Mit185 9 111410536 to 111410667 131 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 185
Gm42527 9 111411434 to 111412913 1479 + unclassified gene predicted gene 42527
D9Dcr121 9 111415077 to 111415182 105 DNA segment DNA segment, Chr 9, Derry C. Roopenian 121
Cpgi22404 9 111438479 to 111438663 184 CpG island CpG island 22404
Cpgi22405 9 111438788 to 111439605 817 CpG island CpG island 22405
Tssr87511 9 111439063 to 111439097 34 + TSS region transcription start site region 87511
Dclk3 9 111439081 to 111489118 50037 + protein coding gene doublecortin-like kinase 3
Tssr87512 9 111439098 to 111439133 35 + TSS region transcription start site region 87512
Tssr91716 9 111461629 to 111461633 4 - TSS region transcription start site region 91716
Cpgi22406 9 111467575 to 111467872 297 CpG island CpG island 22406
Opl3m2 9 111520458 to 111520458 0 QTL open field locomotion in the first three minutes 2
Tssr91717 9 111523219 to 111523242 23 - TSS region transcription start site region 91717
Gm6167 9 111533661 to 111534508 847 - pseudogene predicted gene 6167
Gm42523 9 111544004 to 111548940 4936 - lincRNA gene predicted gene 42523
D9Mit309 9 111549316 to 111549489 173 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 309
Cpgi22407 9 111550584 to 111550877 293 CpG island CpG island 22407
Gm43236 9 111561423 to 111562036 613 + antisense lncRNA gene predicted gene 43236
Stac 9 111561437 to 111690348 128911 - protein coding gene src homology three (SH3) and cysteine rich domain
Gm36088 9 111572570 to 111579389 6819 + lncRNA gene predicted gene, 36088
Gm36034 9 111595310 to 111599628 4318 + lncRNA gene predicted gene, 36034
n-R5s90 9 111613898 to 111614015 117 - rRNA gene nuclear encoded rRNA 5S 90
Tssr87513 9 111641815 to 111641817 2 + TSS region transcription start site region 87513
Cpgi22408 9 111689782 to 111690692 910 CpG island CpG island 22408
Tssr91718 9 111690214 to 111690240 26 - TSS region transcription start site region 91718
Tssr91719 9 111690313 to 111690344 31 - TSS region transcription start site region 91719
D9Dcr122 9 111779474 to 111779569 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 122
Tssr87514 9 111885290 to 111885293 3 + TSS region transcription start site region 87514
4930545L08Rik 9 111912311 to 111918666 6355 - lincRNA gene RIKEN cDNA 4930545L08 gene
Gm39430 9 111975467 to 111978001 2534 - lncRNA gene predicted gene, 39430
Tssr91720 9 111977877 to 111977904 27 - TSS region transcription start site region 91720
Arpp21 9 112065091 to 112235938 170847 - protein coding gene cyclic AMP-regulated phosphoprotein, 21
Tssr91721 9 112073868 to 112073879 11 - TSS region transcription start site region 91721
Tssr91722 9 112077912 to 112077952 40 - TSS region transcription start site region 91722
Tssr91723 9 112087747 to 112087765 18 - TSS region transcription start site region 91723
Tssr91724 9 112092634 to 112092649 15 - TSS region transcription start site region 91724
Tssr91725 9 112095126 to 112095139 13 - TSS region transcription start site region 91725
Tssr91726 9 112097666 to 112097715 49 - TSS region transcription start site region 91726
Tssr91727 9 112097745 to 112097755 10 - TSS region transcription start site region 91727
Tssr91728 9 112097821 to 112097836 15 - TSS region transcription start site region 91728
Tssr91729 9 112097969 to 112097978 9 - TSS region transcription start site region 91729
Tssr91730 9 112098003 to 112098012 9 - TSS region transcription start site region 91730
Tssr91731 9 112098071 to 112098085 14 - TSS region transcription start site region 91731
Tssr91732 9 112099201 to 112099225 24 - TSS region transcription start site region 91732
Tssr91733 9 112099235 to 112099249 14 - TSS region transcription start site region 91733
Tssr91734 9 112099278 to 112099289 11 - TSS region transcription start site region 91734
Tssr91735 9 112099326 to 112099338 12 - TSS region transcription start site region 91735
Tssr91736 9 112099457 to 112099468 11 - TSS region transcription start site region 91736
Tssr91737 9 112099991 to 112100006 15 - TSS region transcription start site region 91737
Tssr91738 9 112101686 to 112101689 3 - TSS region transcription start site region 91738
Tssr91739 9 112104962 to 112104966 4 - TSS region transcription start site region 91739
Tssr91740 9 112108042 to 112108056 14 - TSS region transcription start site region 91740
Tssr91741 9 112108136 to 112108154 18 - TSS region transcription start site region 91741
Tssr91742 9 112113767 to 112113804 37 - TSS region transcription start site region 91742
Tssr91743 9 112113864 to 112113871 7 - TSS region transcription start site region 91743
Tssr91744 9 112113952 to 112113964 12 - TSS region transcription start site region 91744
Mir128-2 9 112118636 to 112118711 75 - miRNA gene microRNA 128-2
Tssr91745 9 112118640 to 112118643 3 - TSS region transcription start site region 91745
Tssr91746 9 112120174 to 112120188 14 - TSS region transcription start site region 91746
Tssr91747 9 112120583 to 112120589 6 - TSS region transcription start site region 91747
Tssr91748 9 112121333 to 112121346 13 - TSS region transcription start site region 91748
Tssr91749 9 112121373 to 112121384 11 - TSS region transcription start site region 91749
Tssr91750 9 112124353 to 112124381 28 - TSS region transcription start site region 91750
Tssr91751 9 112124412 to 112124424 12 - TSS region transcription start site region 91751
Tssr91752 9 112124762 to 112124772 10 - TSS region transcription start site region 91752
Tssr91753 9 112124824 to 112124833 9 - TSS region transcription start site region 91753
Tssr91754 9 112126805 to 112126808 3 - TSS region transcription start site region 91754
Tssr91755 9 112139066 to 112139077 11 - TSS region transcription start site region 91755
Tssr91756 9 112139344 to 112139365 21 - TSS region transcription start site region 91756
Tssr91757 9 112139427 to 112139438 11 - TSS region transcription start site region 91757
Tssr91758 9 112140551 to 112140554 3 - TSS region transcription start site region 91758
Tssr91759 9 112141324 to 112141328 4 - TSS region transcription start site region 91759
Tssr91760 9 112141397 to 112141401 4 - TSS region transcription start site region 91760
Tssr91761 9 112156006 to 112156022 16 - TSS region transcription start site region 91761
Tssr91762 9 112156087 to 112156133 46 - TSS region transcription start site region 91762
Tssr91763 9 112156213 to 112156231 18 - TSS region transcription start site region 91763
Tssr91764 9 112156461 to 112156473 12 - TSS region transcription start site region 91764
Tssr91765 9 112157379 to 112157383 4 - TSS region transcription start site region 91765
Tssr91766 9 112160261 to 112160273 12 - TSS region transcription start site region 91766
Tssr91767 9 112160456 to 112160467 11 - TSS region transcription start site region 91767
Tssr91768 9 112160681 to 112160688 7 - TSS region transcription start site region 91768
Tssr91769 9 112164296 to 112164309 13 - TSS region transcription start site region 91769
Tssr91770 9 112164351 to 112164365 14 - TSS region transcription start site region 91770
Tssr91771 9 112164543 to 112164559 16 - TSS region transcription start site region 91771
Tssr91772 9 112164640 to 112164652 12 - TSS region transcription start site region 91772
Tssr3042 9 112164672 to 112164683 11 - TSS region transcription start site region 3042
Tssr91773 9 112165076 to 112165081 5 - TSS region transcription start site region 91773
Tssr91774 9 112166621 to 112166655 34 - TSS region transcription start site region 91774
Tssr91775 9 112166686 to 112166702 16 - TSS region transcription start site region 91775
Tssr91776 9 112172477 to 112172487 10 - TSS region transcription start site region 91776
3110037B15Rik 9 112175086 to 112175464 378 unclassified gene RIKEN cDNA 3110037B15 gene
Tssr91777 9 112179318 to 112179322 4 - TSS region transcription start site region 91777
Tssr91778 9 112185781 to 112185791 10 - TSS region transcription start site region 91778
Tssr91779 9 112185929 to 112185936 7 - TSS region transcription start site region 91779
Tssr91780 9 112185939 to 112185955 16 - TSS region transcription start site region 91780
Tssr91781 9 112185956 to 112185967 11 - TSS region transcription start site region 91781
Tssr91782 9 112187821 to 112187862 41 - TSS region transcription start site region 91782
Tssr91783 9 112187875 to 112187878 3 - TSS region transcription start site region 91783
Tssr91784 9 112187898 to 112187938 40 - TSS region transcription start site region 91784
Tssr91785 9 112199906 to 112199915 9 - TSS region transcription start site region 91785
Tssr91786 9 112200017 to 112200028 11 - TSS region transcription start site region 91786
Tssr91787 9 112200247 to 112200249 2 - TSS region transcription start site region 91787
Tssr91788 9 112211751 to 112211753 2 - TSS region transcription start site region 91788
Tssr91789 9 112216544 to 112216563 19 - TSS region transcription start site region 91789
Tssr91790 9 112217318 to 112217337 19 - TSS region transcription start site region 91790
Tssr91791 9 112217344 to 112217355 11 - TSS region transcription start site region 91791
Tssr91792 9 112227205 to 112227217 12 - TSS region transcription start site region 91792
Tssr87515 9 112227427 to 112227442 15 + TSS region transcription start site region 87515
Tssr87516 9 112227443 to 112227461 18 + TSS region transcription start site region 87516
2310075C17Rik 9 112227579 to 112228242 663 + lincRNA gene RIKEN cDNA 2310075C17 gene
Tssr91793 9 112229985 to 112229996 11 - TSS region transcription start site region 91793
Tssr91794 9 112231169 to 112231184 15 - TSS region transcription start site region 91794
Tssr91795 9 112232368 to 112232386 18 - TSS region transcription start site region 91795
Tssr91796 9 112232407 to 112232422 15 - TSS region transcription start site region 91796
Tssr91797 9 112232449 to 112232460 11 - TSS region transcription start site region 91797
Tssr91798 9 112233119 to 112233128 9 - TSS region transcription start site region 91798
Tssr91799 9 112233240 to 112233254 14 - TSS region transcription start site region 91799
Tssr91800 9 112233255 to 112233269 14 - TSS region transcription start site region 91800
Tssr91801 9 112233274 to 112233286 12 - TSS region transcription start site region 91801
Tssr91802 9 112233312 to 112233323 11 - TSS region transcription start site region 91802
Tssr91803 9 112233379 to 112233412 33 - TSS region transcription start site region 91803
Tssr91804 9 112233551 to 112233570 19 - TSS region transcription start site region 91804
Tssr87517 9 112234233 to 112234251 18 + TSS region transcription start site region 87517
Tssr87518 9 112234257 to 112234313 56 + TSS region transcription start site region 87518
2900079G21Rik 9 112234277 to 112348925 114648 + lincRNA gene RIKEN cDNA 2900079G21 gene
Cpgi22409 9 112234345 to 112235763 1418 CpG island CpG island 22409
Tssr91805 9 112234591 to 112234619 28 - TSS region transcription start site region 91805
Tssr91806 9 112234627 to 112234644 17 - TSS region transcription start site region 91806
Tssr91807 9 112234808 to 112234822 14 - TSS region transcription start site region 91807
Tssr91808 9 112234830 to 112234858 28 - TSS region transcription start site region 91808
Tssr91809 9 112234884 to 112234903 19 - TSS region transcription start site region 91809
Tssr91810 9 112234956 to 112234967 11 - TSS region transcription start site region 91810
Tssr91811 9 112235142 to 112235196 54 - TSS region transcription start site region 91811
Tssr91812 9 112235452 to 112235502 50 - TSS region transcription start site region 91812
Tssr91813 9 112235511 to 112235536 25 - TSS region transcription start site region 91813
Tssr91814 9 112235830 to 112235842 12 - TSS region transcription start site region 91814
Tssr91815 9 112235854 to 112235865 11 - TSS region transcription start site region 91815
Tssr91816 9 112235889 to 112235894 5 - TSS region transcription start site region 91816
Tssr91817 9 112235900 to 112235911 11 - TSS region transcription start site region 91817
Tssr91818 9 112235919 to 112235933 14 - TSS region transcription start site region 91818
Tssr91819 9 112235940 to 112235946 6 - TSS region transcription start site region 91819
Tssr91820 9 112235966 to 112235975 9 - TSS region transcription start site region 91820
Tssr87519 9 112256292 to 112256341 49 + TSS region transcription start site region 87519
Gm39431 9 112308195 to 112415008 106813 + lncRNA gene predicted gene, 39431
Tssr3043 9 112308224 to 112308249 25 + TSS region transcription start site region 3043
4933411E02Rik 9 112390104 to 112461630 71526 - lincRNA gene RIKEN cDNA 4933411E02 gene
Gm27847 9 112489616 to 112489722 106 + miRNA gene predicted gene, 27847
Tssr87520 9 112505005 to 112505012 7 + TSS region transcription start site region 87520
Gm24957 9 112522529 to 112522660 131 + snoRNA gene predicted gene, 24957
D9Mit149 9 112754680 to 112754828 148 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 149
D9Mit213 9 112797624 to 112797815 191 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 213
Gm19022 9 112868889 to 112869458 569 - pseudogene predicted gene, 19022
D9Mit200 9 112872783 to 112872929 146 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 200
Psl5 9 112872929 to 94981301 -17891628 QTL promotion susceptibility QTL 5
Gm36251 9 113070983 to 113123029 52046 - lincRNA gene predicted gene, 36251
Tssr87521 9 113122492 to 113122514 22 + TSS region transcription start site region 87521
Gm46133 9 113141241 to 113153783 12542 + lncRNA gene predicted gene, 46133
Gm4657 9 113174608 to 113189815 15207 - lincRNA gene predicted gene 4657
Tssr87522 9 113279295 to 113279300 5 + TSS region transcription start site region 87522