Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:109059248-110639259

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356 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Trex1 9 109057932 to 109059723 1791 - protein coding gene three prime repair exonuclease 1
Tssr91577 9 109059216 to 109059259 43 - TSS region transcription start site region 91577
Tssr91578 9 109059676 to 109059706 30 - TSS region transcription start site region 91578
Tssr91579 9 109059711 to 109059771 60 - TSS region transcription start site region 91579
Atrip 9 109059747 to 109074530 14783 - protein coding gene ATR interacting protein
Tssr91580 9 109071714 to 109071718 4 - TSS region transcription start site region 91580
Cpgi22363 9 109073674 to 109074460 786 CpG island CpG island 22363
Tssr91581 9 109074049 to 109074140 91 - TSS region transcription start site region 91581
Tma7 9 109077988 to 109082381 4393 - protein coding gene translational machinery associated 7
Cpgi22364 9 109082080 to 109082722 642 CpG island CpG island 22364
Tssr91582 9 109082372 to 109082414 42 - TSS region transcription start site region 91582
Tssr87223 9 109082485 to 109082535 50 + TSS region transcription start site region 87223
Ccdc51 9 109082493 to 109092489 9996 + protein coding gene coiled-coil domain containing 51
Gm7628 9 109093844 to 109097796 3952 - antisense lncRNA gene predicted gene 7628
Tssr3014 9 109094385 to 109094404 19 + TSS region transcription start site region 3014
Tssr87224 9 109094506 to 109094515 9 + TSS region transcription start site region 87224
Cpgi22365 9 109094537 to 109096202 1665 CpG island CpG island 22365
Tssr87225 9 109094835 to 109094850 15 + TSS region transcription start site region 87225
Tssr87226 9 109095250 to 109095271 21 + TSS region transcription start site region 87226
Plxnb1 9 109095389 to 109119917 24528 + protein coding gene plexin B1
Tssr87227 9 109095398 to 109095411 13 + TSS region transcription start site region 87227
Tssr87228 9 109095427 to 109095453 26 + TSS region transcription start site region 87228
Tssr87229 9 109095535 to 109095547 12 + TSS region transcription start site region 87229
Tssr87230 9 109095568 to 109095600 32 + TSS region transcription start site region 87230
Tssr87231 9 109095604 to 109095609 5 + TSS region transcription start site region 87231
Tssr91583 9 109095775 to 109095804 29 - TSS region transcription start site region 91583
Tssr91584 9 109095813 to 109095826 13 - TSS region transcription start site region 91584
Tssr87232 9 109096659 to 109096662 3 + TSS region transcription start site region 87232
Tssr87233 9 109102789 to 109102802 13 + TSS region transcription start site region 87233
Tssr87234 9 109103544 to 109103583 39 + TSS region transcription start site region 87234
Tssr87235 9 109105284 to 109105327 43 + TSS region transcription start site region 87235
Gm39423 9 109122637 to 109125907 3270 + lncRNA gene predicted gene, 39423
Fbxw21 9 109139454 to 109162022 22568 - protein coding gene F-box and WD-40 domain protein 21
Fbxw13 9 109179227 to 109195975 16748 - protein coding gene F-box and WD-40 domain protein 13
Fbxw20 9 109217432 to 109234754 17322 - protein coding gene F-box and WD-40 domain protein 20
Tcq13 9 109260000 to 59990000 -49270000 QTL total cholesterol QTL 13
Fbxw14 9 109270975 to 109287729 16754 - protein coding gene F-box and WD-40 domain protein 14
Gm22821 9 109295542 to 109295648 106 - snRNA gene predicted gene, 22821
Fbxw28 9 109322886 to 109339659 16773 - protein coding gene F-box and WD-40 domain protein 28
Gm25484 9 109347524 to 109347630 106 - snRNA gene predicted gene, 25484
Gm24641 9 109358229 to 109358335 106 - snRNA gene predicted gene, 24641
Fbxw22 9 109378400 to 109404294 25894 - protein coding gene F-box and WD-40 domain protein 22
Fbxw16 9 109432318 to 109449140 16822 - protein coding gene F-box and WD-40 domain protein 16
Gm42494 9 109440128 to 109443178 3050 + unclassified gene predicted gene 42494
Gm42493 9 109448645 to 109460105 11460 + antisense lncRNA gene predicted gene 42493
Fbxw19 9 109478507 to 109495863 17356 - protein coding gene F-box and WD-40 domain protein 19
D9Dcr114 9 109510111 to 109510208 97 DNA segment DNA segment, Chr 9, Derry C. Roopenian 114
Fbxw23 9 109516388 to 109534858 18470 - protein coding gene F-box and WD-40 domain protein 23
Tssr87236 9 109537046 to 109537081 35 + TSS region transcription start site region 87236
Gm42756 9 109537100 to 109552780 15680 + antisense lncRNA gene predicted gene 42756
Gm43089 9 109541701 to 109542913 1212 - pseudogene predicted gene 43089
Tssr91585 9 109543073 to 109543076 3 - TSS region transcription start site region 91585
Fbxw15 9 109552602 to 109568262 15660 - protein coding gene F-box and WD-40 domain protein 15
D9Mit277 9 109558488 to 109558657 169 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 277
Gm42755 9 109572732 to 109574224 1492 - unclassified gene predicted gene 42755
Fbxw24 9 109601116 to 109626057 24941 - protein coding gene F-box and WD-40 domain protein 24
Fbxw25 9 109645122 to 109664652 19530 - protein coding gene F-box and WD-40 domain protein 25
Fbxw18 9 109676734 to 109702700 25966 - protein coding gene F-box and WD-40 domain protein 18
Gm43209 9 109702934 to 109704521 1587 + unclassified gene predicted gene 43209
Fbxw26 9 109717566 to 109746089 28523 - protein coding gene F-box and WD-40 domain protein 26
Fbxw27 9 109766045 to 109790670 24625 - protein coding gene F-box and WD-40 domain protein 27
Gm40579 9 109773289 to 109776217 2928 + lncRNA gene predicted gene, 40579
Tssr87237 9 109812207 to 109812218 11 + TSS region transcription start site region 87237
Tssr87238 9 109812219 to 109812230 11 + TSS region transcription start site region 87238
Tssr87239 9 109812249 to 109812269 20 + TSS region transcription start site region 87239
Spink8 9 109812280 to 109826633 14353 + protein coding gene serine peptidase inhibitor, Kazal type 8
Tssr87240 9 109812289 to 109812300 11 + TSS region transcription start site region 87240
Tssr87241 9 109816538 to 109816549 11 + TSS region transcription start site region 87241
Tssr87242 9 109816579 to 109816587 8 + TSS region transcription start site region 87242
Tssr87243 9 109816588 to 109816615 27 + TSS region transcription start site region 87243
Tssr87244 9 109816618 to 109816639 21 + TSS region transcription start site region 87244
Tssr87245 9 109816643 to 109816669 26 + TSS region transcription start site region 87245
Tssr87246 9 109816675 to 109816699 24 + TSS region transcription start site region 87246
3000002C10Rik 9 109830153 to 109831431 1278 - pseudogene RIKEN cDNA 3000002C10 gene
Cpgi22366 9 109832612 to 109833150 538 CpG island CpG island 22366
Tssr91586 9 109832667 to 109832680 13 - TSS region transcription start site region 91586
Nme6 9 109832710 to 109842974 10264 + protein coding gene NME/NM23 nucleoside diphosphate kinase 6
Tssr91587 9 109832713 to 109832739 26 - TSS region transcription start site region 91587
Tssr87247 9 109832756 to 109832802 46 + TSS region transcription start site region 87247
Tssr87248 9 109832998 to 109833058 60 + TSS region transcription start site region 87248
Tssr87249 9 109833059 to 109833073 14 + TSS region transcription start site region 87249
Tssr87250 9 109833135 to 109833157 22 + TSS region transcription start site region 87250
Tssr87251 9 109833163 to 109833201 38 + TSS region transcription start site region 87251
Tssr87252 9 109833217 to 109833226 9 + TSS region transcription start site region 87252
Camp 9 109847377 to 109849456 2079 - protein coding gene cathelicidin antimicrobial peptide
Tssr3015 9 109847385 to 109847389 4 + TSS region transcription start site region 3015
Tssr3016 9 109848423 to 109848439 16 + TSS region transcription start site region 3016
Tssr87253 9 109848594 to 109848610 16 + TSS region transcription start site region 87253
Tssr87254 9 109848615 to 109848624 9 + TSS region transcription start site region 87254
Tssr91588 9 109848700 to 109848710 10 - TSS region transcription start site region 91588
Tssr3017 9 109849248 to 109849259 11 + TSS region transcription start site region 3017
Tssr87255 9 109849302 to 109849311 9 + TSS region transcription start site region 87255
Tssr91589 9 109849440 to 109849454 14 - TSS region transcription start site region 91589
Tssr87256 9 109861600 to 109861610 10 + TSS region transcription start site region 87256
Gm39427 9 109861619 to 109863548 1929 + lncRNA gene predicted gene, 39427
Tssr87257 9 109861633 to 109861640 7 + TSS region transcription start site region 87257
Tssr87258 9 109861646 to 109861656 10 + TSS region transcription start site region 87258
Cpgi22367 9 109875280 to 109876402 1122 CpG island CpG island 22367
Tssr87259 9 109875541 to 109875591 50 + TSS region transcription start site region 87259
Cdc25a 9 109875579 to 109893895 18316 + protein coding gene cell division cycle 25A
Tssr87260 9 109875601 to 109875614 13 + TSS region transcription start site region 87260
Tssr87261 9 109875910 to 109876000 90 + TSS region transcription start site region 87261
Mir7089 9 109889643 to 109889710 67 + miRNA gene microRNA 7089
Tssr91590 9 109892457 to 109892464 7 - TSS region transcription start site region 91590
Tssr87262 9 109896437 to 109896441 4 + TSS region transcription start site region 87262
Tssr91591 9 109902341 to 109902347 6 - TSS region transcription start site region 91591
D9Dcr115 9 109921368 to 109921463 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 115
Gm4644 9 109924351 to 109924750 399 - pseudogene predicted gene 4644
Cpgi22368 9 109931308 to 109932623 1315 CpG island CpG island 22368
Tssr87263 9 109931463 to 109931488 25 + TSS region transcription start site region 87263
Map4 9 109931489 to 110083954 152465 + protein coding gene microtubule-associated protein 4
Tssr87264 9 109931492 to 109931515 23 + TSS region transcription start site region 87264
Tssr87265 9 109931542 to 109931552 10 + TSS region transcription start site region 87265
Tssr87266 9 109931575 to 109931578 3 + TSS region transcription start site region 87266
Tssr87267 9 109931774 to 109931798 24 + TSS region transcription start site region 87267
Tssr87268 9 109931809 to 109931835 26 + TSS region transcription start site region 87268
Tssr87269 9 109931836 to 109931853 17 + TSS region transcription start site region 87269
Tssr87270 9 109931863 to 109931885 22 + TSS region transcription start site region 87270
Tssr3018 9 109931887 to 109931892 5 + TSS region transcription start site region 3018
Tssr87271 9 109931894 to 109931915 21 + TSS region transcription start site region 87271
Tssr87272 9 109937222 to 109937238 16 + TSS region transcription start site region 87272
Tssr87273 9 109945915 to 109945934 19 + TSS region transcription start site region 87273
Tssr87274 9 109945972 to 109945995 23 + TSS region transcription start site region 87274
Tssr87275 9 109948277 to 109948281 4 + TSS region transcription start site region 87275
Tssr87276 9 109958600 to 109958605 5 + TSS region transcription start site region 87276
Tssr87277 9 109968971 to 109968982 11 + TSS region transcription start site region 87277
Tssr87278 9 109969004 to 109969031 27 + TSS region transcription start site region 87278
Tssr87279 9 109969032 to 109969037 5 + TSS region transcription start site region 87279
Gm4734 9 109970433 to 109971209 776 + pseudogene predicted gene 4734
Gm43732 9 109988967 to 109991834 2867 - antisense lncRNA gene predicted gene 43732
Tssr87280 9 109999763 to 109999813 50 + TSS region transcription start site region 87280
Tssr87281 9 110003176 to 110003192 16 + TSS region transcription start site region 87281
Tssr87282 9 110003443 to 110003448 5 + TSS region transcription start site region 87282
Tssr87283 9 110003638 to 110003642 4 + TSS region transcription start site region 87283
Tssr87284 9 110003810 to 110003824 14 + TSS region transcription start site region 87284
Gm42433 9 110005974 to 110006913 939 + unclassified gene predicted gene 42433
Tssr87285 9 110009558 to 110009565 7 + TSS region transcription start site region 87285
Tssr87286 9 110010464 to 110010495 31 + TSS region transcription start site region 87286
Tssr87287 9 110027700 to 110027719 19 + TSS region transcription start site region 87287
Tssr87288 9 110027742 to 110027753 11 + TSS region transcription start site region 87288
Tssr87289 9 110032126 to 110032139 13 + TSS region transcription start site region 87289
Tssr87290 9 110032143 to 110032169 26 + TSS region transcription start site region 87290
Tssr87291 9 110032176 to 110032193 17 + TSS region transcription start site region 87291
Tssr87292 9 110032196 to 110032208 12 + TSS region transcription start site region 87292
Tssr87293 9 110034380 to 110034414 34 + TSS region transcription start site region 87293
Tssr87294 9 110034431 to 110034526 95 + TSS region transcription start site region 87294
Tssr87295 9 110034547 to 110034565 18 + TSS region transcription start site region 87295
Tssr87296 9 110034580 to 110034597 17 + TSS region transcription start site region 87296
Tssr87297 9 110034598 to 110034618 20 + TSS region transcription start site region 87297
Tssr87298 9 110034621 to 110034648 27 + TSS region transcription start site region 87298
Tssr87299 9 110034666 to 110034679 13 + TSS region transcription start site region 87299
Tssr87300 9 110034686 to 110034701 15 + TSS region transcription start site region 87300
Tssr87301 9 110034721 to 110034741 20 + TSS region transcription start site region 87301
Tssr87302 9 110034775 to 110034791 16 + TSS region transcription start site region 87302
Tssr87303 9 110034794 to 110034807 13 + TSS region transcription start site region 87303
Tssr87304 9 110034835 to 110034847 12 + TSS region transcription start site region 87304
Tssr87305 9 110034938 to 110034955 17 + TSS region transcription start site region 87305
Tssr87306 9 110034956 to 110034968 12 + TSS region transcription start site region 87306
Tssr87307 9 110035229 to 110035241 12 + TSS region transcription start site region 87307
Tssr87308 9 110035316 to 110035349 33 + TSS region transcription start site region 87308
Tssr87309 9 110035370 to 110035380 10 + TSS region transcription start site region 87309
Tssr87310 9 110036809 to 110036825 16 + TSS region transcription start site region 87310
Gm42432 9 110041180 to 110042796 1616 + unclassified gene predicted gene 42432
Tssr87311 9 110045432 to 110045437 5 + TSS region transcription start site region 87311
Cpgi22369 9 110051992 to 110052255 263 CpG island CpG island 22369
Tssr87312 9 110051996 to 110052010 14 + TSS region transcription start site region 87312
Tssr87313 9 110052016 to 110052111 95 + TSS region transcription start site region 87313
Tssr87314 9 110052125 to 110052136 11 + TSS region transcription start site region 87314
Tssr87315 9 110053306 to 110053323 17 + TSS region transcription start site region 87315
Tssr87316 9 110055140 to 110055144 4 + TSS region transcription start site region 87316
D9Ertd256e 9 110055575 to 110055815 240 DNA segment DNA segment, Chr 9, ERATO Doi 256, expressed
Tssr87317 9 110058809 to 110058815 6 + TSS region transcription start site region 87317
Tssr87318 9 110062561 to 110062591 30 + TSS region transcription start site region 87318
Tssr87319 9 110062608 to 110062620 12 + TSS region transcription start site region 87319
Tssr87320 9 110062628 to 110062671 43 + TSS region transcription start site region 87320
Tssr87321 9 110062791 to 110062803 12 + TSS region transcription start site region 87321
Tssr87322 9 110062812 to 110062819 7 + TSS region transcription start site region 87322
Tssr87323 9 110062832 to 110062851 19 + TSS region transcription start site region 87323
Tssr87324 9 110063012 to 110063100 88 + TSS region transcription start site region 87324
Tssr87325 9 110064353 to 110064367 14 + TSS region transcription start site region 87325
Tssr87326 9 110064408 to 110064418 10 + TSS region transcription start site region 87326
Tssr87327 9 110082636 to 110082651 15 + TSS region transcription start site region 87327
Dhx30 9 110084319 to 110117616 33297 - protein coding gene DEAH (Asp-Glu-Ala-His) box polypeptide 30
Cpgi22370 9 110100715 to 110101267 552 CpG island CpG island 22370
Tssr91592 9 110101010 to 110101052 42 - TSS region transcription start site region 91592
D9Mit348 9 110105359 to 110105529 170 DNA segment DNA Segment, Chr 9 Massachusetts Institute of Technology 348
D9Mit348.3 9 110105512 to 110105630 118 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 348.3
Gm27855 9 110109012 to 110109139 127 - unclassified non-coding RNA gene predicted gene, 27855
Cpgi22371 9 110116815 to 110118055 1240 CpG island CpG island 22371
Tssr91593 9 110117330 to 110117353 23 - TSS region transcription start site region 91593
Tssr91594 9 110117379 to 110117445 66 - TSS region transcription start site region 91594
Tssr91595 9 110117448 to 110117469 21 - TSS region transcription start site region 91595
Tssr87328 9 110117493 to 110117519 26 + TSS region transcription start site region 87328
Tssr91596 9 110117535 to 110117544 9 - TSS region transcription start site region 91596
Gm23377 9 110121680 to 110121805 125 - snoRNA gene predicted gene, 23377
Cpgi22372 9 110131610 to 110132595 985 CpG island CpG island 22372
Tssr87329 9 110131989 to 110131998 9 + TSS region transcription start site region 87329
Tssr87330 9 110132015 to 110132102 87 + TSS region transcription start site region 87330
Smarcc1 9 110132024 to 110240178 108154 + protein coding gene SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
Tssr91597 9 110132366 to 110132396 30 - TSS region transcription start site region 91597