Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:109053400-109729294

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84 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Shisa5 9 109038565 to 109057777 19212 + protein coding gene shisa family member 5
Tssr91570 9 109054783 to 109054796 13 - TSS region transcription start site region 91570
Tssr87207 9 109054839 to 109054871 32 + TSS region transcription start site region 87207
Tssr87208 9 109054881 to 109054901 20 + TSS region transcription start site region 87208
Tssr87209 9 109054903 to 109054990 87 + TSS region transcription start site region 87209
Tssr87210 9 109055029 to 109055040 11 + TSS region transcription start site region 87210
Tssr87211 9 109055102 to 109055114 12 + TSS region transcription start site region 87211
Tssr87212 9 109055597 to 109055633 36 + TSS region transcription start site region 87212
Tssr87213 9 109055972 to 109055991 19 + TSS region transcription start site region 87213
Tssr87214 9 109056014 to 109056063 49 + TSS region transcription start site region 87214
Tssr87215 9 109056277 to 109056294 17 + TSS region transcription start site region 87215
Tssr87216 9 109056313 to 109056347 34 + TSS region transcription start site region 87216
Tssr87217 9 109056383 to 109056420 37 + TSS region transcription start site region 87217
Tssr87218 9 109056637 to 109056720 83 + TSS region transcription start site region 87218
Tssr87219 9 109056938 to 109056953 15 + TSS region transcription start site region 87219
Tssr87220 9 109057024 to 109057041 17 + TSS region transcription start site region 87220
Tssr87221 9 109057248 to 109057260 12 + TSS region transcription start site region 87221
Tssr87222 9 109057295 to 109057309 14 + TSS region transcription start site region 87222
Tssr91571 9 109057715 to 109057723 8 - TSS region transcription start site region 91571
Trex1 9 109057932 to 109059723 1791 - protein coding gene three prime repair exonuclease 1
Tssr91572 9 109058236 to 109058271 35 - TSS region transcription start site region 91572
Tssr91573 9 109058393 to 109058405 12 - TSS region transcription start site region 91573
Tssr91574 9 109058623 to 109058638 15 - TSS region transcription start site region 91574
Tssr91575 9 109058674 to 109058685 11 - TSS region transcription start site region 91575
Tssr91576 9 109058759 to 109058771 12 - TSS region transcription start site region 91576
Tssr91577 9 109059216 to 109059259 43 - TSS region transcription start site region 91577
Tssr91578 9 109059676 to 109059706 30 - TSS region transcription start site region 91578
Tssr91579 9 109059711 to 109059771 60 - TSS region transcription start site region 91579
Atrip 9 109059747 to 109074530 14783 - protein coding gene ATR interacting protein
Tssr91580 9 109071714 to 109071718 4 - TSS region transcription start site region 91580
Cpgi22363 9 109073674 to 109074460 786 CpG island CpG island 22363
Tssr91581 9 109074049 to 109074140 91 - TSS region transcription start site region 91581
Tma7 9 109077988 to 109082381 4393 - protein coding gene translational machinery associated 7
Cpgi22364 9 109082080 to 109082722 642 CpG island CpG island 22364
Tssr91582 9 109082372 to 109082414 42 - TSS region transcription start site region 91582
Tssr87223 9 109082485 to 109082535 50 + TSS region transcription start site region 87223
Ccdc51 9 109082493 to 109092489 9996 + protein coding gene coiled-coil domain containing 51
Gm7628 9 109093844 to 109097796 3952 - antisense lncRNA gene predicted gene 7628
Tssr3014 9 109094385 to 109094404 19 + TSS region transcription start site region 3014
Tssr87224 9 109094506 to 109094515 9 + TSS region transcription start site region 87224
Cpgi22365 9 109094537 to 109096202 1665 CpG island CpG island 22365
Tssr87225 9 109094835 to 109094850 15 + TSS region transcription start site region 87225
Tssr87226 9 109095250 to 109095271 21 + TSS region transcription start site region 87226
Plxnb1 9 109095389 to 109119917 24528 + protein coding gene plexin B1
Tssr87227 9 109095398 to 109095411 13 + TSS region transcription start site region 87227
Tssr87228 9 109095427 to 109095453 26 + TSS region transcription start site region 87228
Tssr87229 9 109095535 to 109095547 12 + TSS region transcription start site region 87229
Tssr87230 9 109095568 to 109095600 32 + TSS region transcription start site region 87230
Tssr87231 9 109095604 to 109095609 5 + TSS region transcription start site region 87231
Tssr91583 9 109095775 to 109095804 29 - TSS region transcription start site region 91583
Tssr91584 9 109095813 to 109095826 13 - TSS region transcription start site region 91584
Tssr87232 9 109096659 to 109096662 3 + TSS region transcription start site region 87232
Tssr87233 9 109102789 to 109102802 13 + TSS region transcription start site region 87233
Tssr87234 9 109103544 to 109103583 39 + TSS region transcription start site region 87234
Tssr87235 9 109105284 to 109105327 43 + TSS region transcription start site region 87235
Gm39423 9 109122637 to 109125907 3270 + lncRNA gene predicted gene, 39423
Fbxw21 9 109139454 to 109162022 22568 - protein coding gene F-box and WD-40 domain protein 21
Fbxw13 9 109179227 to 109195975 16748 - protein coding gene F-box and WD-40 domain protein 13
Fbxw20 9 109217432 to 109234754 17322 - protein coding gene F-box and WD-40 domain protein 20
Tcq13 9 109260000 to 59990000 -49270000 QTL total cholesterol QTL 13
Fbxw14 9 109270975 to 109287729 16754 - protein coding gene F-box and WD-40 domain protein 14
Gm22821 9 109295542 to 109295648 106 - snRNA gene predicted gene, 22821
Fbxw28 9 109322886 to 109339659 16773 - protein coding gene F-box and WD-40 domain protein 28
Gm25484 9 109347524 to 109347630 106 - snRNA gene predicted gene, 25484
Gm24641 9 109358229 to 109358335 106 - snRNA gene predicted gene, 24641
Fbxw22 9 109378400 to 109404294 25894 - protein coding gene F-box and WD-40 domain protein 22
Fbxw16 9 109432318 to 109449140 16822 - protein coding gene F-box and WD-40 domain protein 16
Gm42494 9 109440128 to 109443178 3050 + unclassified gene predicted gene 42494
Gm42493 9 109448645 to 109460105 11460 + antisense lncRNA gene predicted gene 42493
Fbxw19 9 109478507 to 109495863 17356 - protein coding gene F-box and WD-40 domain protein 19
D9Dcr114 9 109510111 to 109510208 97 DNA segment DNA segment, Chr 9, Derry C. Roopenian 114
Fbxw23 9 109516388 to 109534858 18470 - protein coding gene F-box and WD-40 domain protein 23
Tssr87236 9 109537046 to 109537081 35 + TSS region transcription start site region 87236
Gm42756 9 109537100 to 109552780 15680 + antisense lncRNA gene predicted gene 42756
Gm43089 9 109541701 to 109542913 1212 - pseudogene predicted gene 43089
Tssr91585 9 109543073 to 109543076 3 - TSS region transcription start site region 91585
Fbxw15 9 109552602 to 109568262 15660 - protein coding gene F-box and WD-40 domain protein 15
D9Mit277 9 109558488 to 109558657 169 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 277
Gm42755 9 109572732 to 109574224 1492 - unclassified gene predicted gene 42755
Fbxw24 9 109601116 to 109626057 24941 - protein coding gene F-box and WD-40 domain protein 24
Fbxw25 9 109645122 to 109664652 19530 - protein coding gene F-box and WD-40 domain protein 25
Fbxw18 9 109676734 to 109702700 25966 - protein coding gene F-box and WD-40 domain protein 18
Gm43209 9 109702934 to 109704521 1587 + unclassified gene predicted gene 43209
Fbxw26 9 109717566 to 109746089 28523 - protein coding gene F-box and WD-40 domain protein 26