Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:108360529-108560571

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Usp4 9 108347853 to 108392545 44692 + protein coding gene ubiquitin specific peptidase 4 (proto-oncogene)
Tssr87103 9 108374365 to 108374367 2 + TSS region transcription start site region 87103
Gm37963 9 108389082 to 108390205 1123 + sense intronic lncRNA gene predicted gene, 37963
Tssr3011 9 108392793 to 108392812 19 + TSS region transcription start site region 3011
1700102P08Rik 9 108392805 to 108410934 18129 + protein coding gene RIKEN cDNA 1700102P08 gene
Tssr87104 9 108392820 to 108392843 23 + TSS region transcription start site region 87104
Cpgi22336 9 108392858 to 108393189 331 CpG island CpG island 22336
Tssr87105 9 108392895 to 108392902 7 + TSS region transcription start site region 87105
Tssr87106 9 108392908 to 108392918 10 + TSS region transcription start site region 87106
Tssr87107 9 108393134 to 108393143 9 + TSS region transcription start site region 87107
Tssr87108 9 108397928 to 108397934 6 + TSS region transcription start site region 87108
Ccdc36 9 108403611 to 108428484 24873 - protein coding gene coiled-coil domain containing 36
Splic3 9 108413879 to 108414013 134 QTL spleen iron content 3
Lvic6 9 108413879 to 108414013 134 QTL liver iron content 6
Splic1 9 108413879 to 108414013 134 QTL spleen iron content 1
D9Mit184 9 108413879 to 108414013 134 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 184
Gm25456 9 108430044 to 108430152 108 - snoRNA gene predicted gene, 25456
Cpgi22337 9 108431609 to 108431991 382 CpG island CpG island 22337
Tssr91526 9 108431810 to 108431845 35 - TSS region transcription start site region 91526
Tssr87109 9 108436463 to 108436470 7 + TSS region transcription start site region 87109
Tssr87110 9 108436474 to 108436504 30 + TSS region transcription start site region 87110
BC048562 9 108436482 to 108446083 9601 + protein coding gene cDNA sequence BC048562
Klhdc8b 9 108447636 to 108461581 13945 - protein coding gene kelch domain containing 8B
Cpgi22338 9 108452235 to 108452835 600 CpG island CpG island 22338
Tssr91527 9 108452379 to 108452412 33 - TSS region transcription start site region 91527
Tssr87111 9 108452493 to 108452525 32 + TSS region transcription start site region 87111
Tssr91528 9 108452750 to 108452803 53 - TSS region transcription start site region 91528
Cpgi22339 9 108460402 to 108460997 595 CpG island CpG island 22339
Ccdc71 9 108460527 to 108465938 5411 + protein coding gene coiled-coil domain containing 71
Tssr87112 9 108460529 to 108460571 42 + TSS region transcription start site region 87112
Tssr91529 9 108460913 to 108460937 24 - TSS region transcription start site region 91529
Gm37475 9 108469346 to 108470360 1014 + unclassified gene predicted gene, 37475
Tssr87113 9 108479849 to 108479916 67 + TSS region transcription start site region 87113
Lamb2 9 108479857 to 108490530 10673 + protein coding gene laminin, beta 2
Tssr87114 9 108479923 to 108479935 12 + TSS region transcription start site region 87114
Tssr87115 9 108479942 to 108479951 9 + TSS region transcription start site region 87115
Tssr87116 9 108481708 to 108481733 25 + TSS region transcription start site region 87116
Cpgi22340 9 108490070 to 108491536 1466 CpG island CpG island 22340
Tssr91530 9 108490521 to 108490547 26 - TSS region transcription start site region 91530
Usp19 9 108490607 to 108502337 11730 + protein coding gene ubiquitin specific peptidase 19
Tssr87117 9 108490686 to 108490692 6 + TSS region transcription start site region 87117
Tssr87118 9 108490695 to 108490764 69 + TSS region transcription start site region 87118
Tssr87119 9 108490834 to 108490874 40 + TSS region transcription start site region 87119
D9Dcr111 9 108493947 to 108494044 97 DNA segment DNA segment, Chr 9, Derry C. Roopenian 111
Tssr87120 9 108497916 to 108497934 18 + TSS region transcription start site region 87120
Cpgi22341 9 108507635 to 108508310 675 CpG island CpG island 22341
Qars 9 108508005 to 108515941 7936 + protein coding gene glutaminyl-tRNA synthetase
Tssr87121 9 108508050 to 108508076 26 + TSS region transcription start site region 87121
Tssr87122 9 108508295 to 108508327 32 + TSS region transcription start site region 87122
Cpgi22342 9 108516560 to 108518114 1554 CpG island CpG island 22342
Tssr87123 9 108516955 to 108516968 13 + TSS region transcription start site region 87123
Tssr87124 9 108516976 to 108517006 30 + TSS region transcription start site region 87124
Tssr87125 9 108517070 to 108517117 47 + TSS region transcription start site region 87125
Qrich1 9 108517087 to 108560167 43080 + protein coding gene glutamine-rich 1
Tssr87126 9 108517127 to 108517141 14 + TSS region transcription start site region 87126
Tssr87127 9 108517159 to 108517170 11 + TSS region transcription start site region 87127
Tssr87128 9 108517516 to 108517527 11 + TSS region transcription start site region 87128
Tssr87129 9 108517566 to 108517620 54 + TSS region transcription start site region 87129
Tssr87130 9 108517684 to 108517706 22 + TSS region transcription start site region 87130
Tssr87131 9 108517712 to 108517724 12 + TSS region transcription start site region 87131
Tssr87132 9 108517745 to 108517756 11 + TSS region transcription start site region 87132
Tssr91531 9 108518204 to 108518229 25 - TSS region transcription start site region 91531
Tssr87133 9 108524655 to 108524659 4 + TSS region transcription start site region 87133
Gm38366 9 108530832 to 108532765 1933 + unclassified gene predicted gene, 38366
Tssr87134 9 108533585 to 108533609 24 + TSS region transcription start site region 87134
Tssr87135 9 108534192 to 108534246 54 + TSS region transcription start site region 87135
Gm37678 9 108544214 to 108545359 1145 + unclassified gene predicted gene, 37678
Tssr87136 9 108548426 to 108548430 4 + TSS region transcription start site region 87136
D630038D15Rik 9 108550612 to 108551474 862 unclassified gene RIKEN cDNA D630038D15 gene
Tssr87137 9 108559753 to 108559815 62 + TSS region transcription start site region 87137
Tssr87138 9 108559857 to 108559862 5 + TSS region transcription start site region 87138
Tssr87139 9 108560012 to 108560044 32 + TSS region transcription start site region 87139
Cpgi22343 9 108560149 to 108560911 762 CpG island CpG island 22343
Impdh2 9 108560291 to 108565577 5286 + protein coding gene inosine monophosphate dehydrogenase 2
Tssr87140 9 108560422 to 108560451 29 + TSS region transcription start site region 87140