Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:107986349-108055270

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31 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm20661 9 107983058 to 107995007 11949 + protein coding gene predicted gene 20661
Cpgi22316 9 107985212 to 107986566 1354 CpG island CpG island 22316
Gm24944 9 107987369 to 107987496 127 + snoRNA gene predicted gene, 24944
4921523L03Rik 9 107991684 to 107995656 3972 - antisense lncRNA gene RIKEN cDNA 4921523L03 gene
Tssr87049 9 107992451 to 107992462 11 + TSS region transcription start site region 87049
Tssr87050 9 107992463 to 107992522 59 + TSS region transcription start site region 87050
Cdhr4 9 107992497 to 107999684 7187 + protein coding gene cadherin-related family member 4
Cpgi22317 9 107995645 to 107995925 280 CpG island CpG island 22317
Tssr87051 9 107995728 to 107995738 10 + TSS region transcription start site region 87051
Tssr87052 9 107995739 to 107995790 51 + TSS region transcription start site region 87052
Gm20662 9 107996349 to 108045270 48921 + protein coding gene predicted gene 20662
Tssr87053 9 107997987 to 107997999 12 + TSS region transcription start site region 87053
Tssr87054 9 107998006 to 107998026 20 + TSS region transcription start site region 87054
4930535L15Rik 9 107998116 to 108002404 4288 - antisense lncRNA gene RIKEN cDNA 4930535L15 gene
D9Dcr104 9 108000878 to 108000980 102 DNA segment DNA segment, Chr 9, Derry C. Roopenian 104
Cpgi22318 9 108002024 to 108003368 1344 CpG island CpG island 22318
Tssr87055 9 108002058 to 108002065 7 + TSS region transcription start site region 87055
Tssr91481 9 108002384 to 108002437 53 - TSS region transcription start site region 91481
Tssr87056 9 108002615 to 108002680 65 + TSS region transcription start site region 87056
Ip6k1 9 108002648 to 108048782 46134 + protein coding gene inositol hexaphosphate kinase 1
Gm38134 9 108010976 to 108016608 5632 - antisense lncRNA gene predicted gene, 38134
Tssr87057 9 108023926 to 108023952 26 + TSS region transcription start site region 87057
Tssr87058 9 108045389 to 108045402 13 + TSS region transcription start site region 87058
Cpgi22319 9 108048595 to 108049784 1189 CpG island CpG island 22319
Tssr87059 9 108049254 to 108049339 85 + TSS region transcription start site region 87059
Gmppb 9 108049267 to 108051936 2669 + protein coding gene GDP-mannose pyrophosphorylase B
Tssr87060 9 108049859 to 108049894 35 + TSS region transcription start site region 87060
Rnf123 9 108051672 to 108080309 28637 - protein coding gene ring finger protein 123
Gm20529 9 108051675 to 108058592 6917 + unclassified non-coding RNA gene predicted gene 20529
Tssr87061 9 108053154 to 108053165 11 + TSS region transcription start site region 87061
Amigo3 9 108053159 to 108055701 2542 + protein coding gene adhesion molecule with Ig like domain 3