Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:107472110-107612155

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cacna2d2 9 107399749 to 107529346 129597 + protein coding gene calcium channel, voltage-dependent, alpha 2/delta subunit 2
Gm34037 9 107484062 to 107490794 6732 - lncRNA gene predicted gene, 34037
Cpgi22287 9 107484441 to 107484678 237 CpG island CpG island 22287
Tssr91390 9 107490759 to 107490760 1 - TSS region transcription start site region 91390
Tssr86977 9 107505587 to 107505609 22 + TSS region transcription start site region 86977
Tssr86978 9 107505884 to 107505892 8 + TSS region transcription start site region 86978
Tssr91391 9 107517335 to 107517338 3 - TSS region transcription start site region 91391
Cpgi22288 9 107526447 to 107527518 1071 CpG island CpG island 22288
Cpgi22289 9 107533788 to 107535380 1592 CpG island CpG island 22289
Tmem115 9 107533945 to 107538656 4711 + protein coding gene transmembrane protein 115
Tssr86979 9 107534000 to 107534024 24 + TSS region transcription start site region 86979
Tssr86980 9 107534030 to 107534136 106 + TSS region transcription start site region 86980
Cyb561d2 9 107539011 to 107542188 3177 - protein coding gene cytochrome b-561 domain containing 2
Tssr86981 9 107539548 to 107539550 2 + TSS region transcription start site region 86981
Cpgi22290 9 107541503 to 107542524 1021 CpG island CpG island 22290
Tssr91392 9 107541816 to 107541830 14 - TSS region transcription start site region 91392
Tssr91393 9 107542110 to 107542155 45 - TSS region transcription start site region 91393
Tssr86982 9 107542218 to 107542258 40 + TSS region transcription start site region 86982
Nprl2 9 107542226 to 107545706 3480 + protein coding gene NPR2 like, GATOR1 complex subunit
Cpgi22291 9 107547106 to 107547459 353 CpG island CpG island 22291
Tssr86983 9 107547288 to 107547379 91 + TSS region transcription start site region 86983
Zmynd10 9 107547298 to 107551319 4021 + protein coding gene zinc finger, MYND domain containing 10
Gm34106 9 107547827 to 107550781 2954 - antisense lncRNA gene predicted gene, 34106
Tssr86984 9 107550770 to 107550798 28 + TSS region transcription start site region 86984
Tssr91394 9 107550835 to 107550837 2 - TSS region transcription start site region 91394
Cpgi22292 9 107550939 to 107552050 1111 CpG island CpG island 22292
Tssr86985 9 107551419 to 107551440 21 + TSS region transcription start site region 86985
Tssr86986 9 107551516 to 107551575 59 + TSS region transcription start site region 86986
Rassf1 9 107551555 to 107562267 10712 + protein coding gene Ras association (RalGDS/AF-6) domain family member 1
Cpgi22293 9 107553878 to 107555434 1556 CpG island CpG island 22293
Tssr91395 9 107554393 to 107554415 22 - TSS region transcription start site region 91395
Tssr86987 9 107554577 to 107554591 14 + TSS region transcription start site region 86987
Tssr86988 9 107554606 to 107554631 25 + TSS region transcription start site region 86988
Tssr86989 9 107554633 to 107554651 18 + TSS region transcription start site region 86989
Tssr86990 9 107554671 to 107554684 13 + TSS region transcription start site region 86990
Tssr86991 9 107554685 to 107554763 78 + TSS region transcription start site region 86991
Tssr86992 9 107554795 to 107554809 14 + TSS region transcription start site region 86992
Tssr86993 9 107554817 to 107554831 14 + TSS region transcription start site region 86993
Gm9917 9 107558809 to 107568415 9606 - antisense lncRNA gene predicted gene 9917
Cpgi22294 9 107562887 to 107563624 737 CpG island CpG island 22294
Tssr86994 9 107563246 to 107563285 39 + TSS region transcription start site region 86994
Tusc2 9 107563255 to 107566108 2853 + protein coding gene tumor suppressor 2, mitochondrial calcium regulator
Tssr86995 9 107563286 to 107563297 11 + TSS region transcription start site region 86995
Tssr91396 9 107566867 to 107566897 30 - TSS region transcription start site region 91396
Tssr91397 9 107566937 to 107566984 47 - TSS region transcription start site region 91397
Tssr86996 9 107567903 to 107567941 38 + TSS region transcription start site region 86996
Hyal2 9 107567945 to 107572779 4834 + protein coding gene hyaluronoglucosaminidase 2
Cpgi22295 9 107568975 to 107569705 730 CpG island CpG island 22295
Tssr86997 9 107569112 to 107569135 23 + TSS region transcription start site region 86997
Tssr86998 9 107569138 to 107569155 17 + TSS region transcription start site region 86998
Tssr86999 9 107569156 to 107569184 28 + TSS region transcription start site region 86999
Gm16343 9 107575820 to 107587425 11605 - antisense lncRNA gene predicted gene 16343
Tssr87000 9 107575906 to 107575917 11 + TSS region transcription start site region 87000
Tssr91398 9 107576817 to 107576840 23 - TSS region transcription start site region 91398
Tssr87001 9 107576915 to 107576976 61 + TSS region transcription start site region 87001
Hyal1 9 107576952 to 107580137 3185 + protein coding gene hyaluronoglucosaminidase 1
Tssr87002 9 107579900 to 107579912 12 + TSS region transcription start site region 87002
Naa80 9 107580170 to 107584048 3878 + protein coding gene N(alpha)-acetyltransferase 80, NatH catalytic subunit
Cpgi22296 9 107580607 to 107581088 481 CpG island CpG island 22296
Tssr87003 9 107580647 to 107580699 52 + TSS region transcription start site region 87003
Tssr87004 9 107580721 to 107580732 11 + TSS region transcription start site region 87004
Tssr87005 9 107580736 to 107580744 8 + TSS region transcription start site region 87005
Tssr87006 9 107580746 to 107580833 87 + TSS region transcription start site region 87006
Hyal3 9 107581296 to 107587359 6063 + protein coding gene hyaluronoglucosaminidase 3
Tssr87007 9 107581300 to 107581312 12 + TSS region transcription start site region 87007
Cpgi22297 9 107587418 to 107588288 870 CpG island CpG island 22297
Tssr87008 9 107587642 to 107587656 14 + TSS region transcription start site region 87008
Tssr87009 9 107587673 to 107587680 7 + TSS region transcription start site region 87009
Tssr87010 9 107587711 to 107587746 35 + TSS region transcription start site region 87010
Ifrd2 9 107587718 to 107593038 5320 + protein coding gene interferon-related developmental regulator 2
Tssr87011 9 107587757 to 107587801 44 + TSS region transcription start site region 87011
Tssr87012 9 107587866 to 107587889 23 + TSS region transcription start site region 87012
Tssr87013 9 107590924 to 107590945 21 + TSS region transcription start site region 87013
Tssr87014 9 107590946 to 107590976 30 + TSS region transcription start site region 87014
Lsmem2 9 107593841 to 107597075 3234 - protein coding gene leucine-rich single-pass membrane protein 2
Gm38150 9 107594440 to 107594891 451 + lincRNA gene predicted gene, 38150
Tssr91399 9 107594469 to 107594477 8 - TSS region transcription start site region 91399
Tssr91400 9 107597022 to 107597082 60 - TSS region transcription start site region 91400
Sema3b 9 107597674 to 107609229 11555 - protein coding gene sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B
Cpgi22298 9 107598650 to 107599285 635 CpG island CpG island 22298
Cpgi22299 9 107599930 to 107600160 230 CpG island CpG island 22299
Tssr91401 9 107605103 to 107605122 19 - TSS region transcription start site region 91401
Tssr91402 9 107605130 to 107605173 43 - TSS region transcription start site region 91402
Tssr91403 9 107605247 to 107605259 12 - TSS region transcription start site region 91403
Tssr91404 9 107605263 to 107605283 20 - TSS region transcription start site region 91404
Tssr91405 9 107605295 to 107605331 36 - TSS region transcription start site region 91405
Tssr91406 9 107606673 to 107606688 15 - TSS region transcription start site region 91406
Tssr87015 9 107606778 to 107606811 33 + TSS region transcription start site region 87015
Tssr91407 9 107609182 to 107609214 32 - TSS region transcription start site region 91407
Tssr91408 9 107609215 to 107609246 31 - TSS region transcription start site region 91408