Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:105750677-106170688

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60 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Col6a6 9 105689417 to 105828245 138828 - protein coding gene collagen, type VI, alpha 6
Tssr91263 9 105764160 to 105764161 1 - TSS region transcription start site region 91263
Tssr91264 9 105764653 to 105764664 11 - TSS region transcription start site region 91264
Tssr91265 9 105764712 to 105764740 28 - TSS region transcription start site region 91265
Cpgi22248 9 105819059 to 105819667 608 CpG island CpG island 22248
Tssr91266 9 105819467 to 105819496 29 - TSS region transcription start site region 91266
Tssr91267 9 105819553 to 105819554 1 - TSS region transcription start site region 91267
Tssr91268 9 105827996 to 105828049 53 - TSS region transcription start site region 91268
Tssr91269 9 105828054 to 105828066 12 - TSS region transcription start site region 91269
Tssr91270 9 105828086 to 105828100 14 - TSS region transcription start site region 91270
Tssr91271 9 105828121 to 105828173 52 - TSS region transcription start site region 91271
Tssr3001 9 105829959 to 105829960 1 - TSS region transcription start site region 3001
Col6a5 9 105856078 to 105960643 104565 - protein coding gene collagen, type VI, alpha 5
D9Dcr87 9 105882793 to 105882932 139 DNA segment DNA segment, Chr 9, Derry C. Roopenian 87
D9Mit310 9 105882832 to 105882935 103 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology 310
Tssr91272 9 105960642 to 105960659 17 - TSS region transcription start site region 91272
Tssr91273 9 105960677 to 105960688 11 - TSS region transcription start site region 91273
Col6a4 9 105990109 to 106096828 106719 - protein coding gene collagen, type VI, alpha 4
Cpgi22249 9 106000282 to 106000620 338 CpG island CpG island 22249
Gm24631 9 106001718 to 106001798 80 + snRNA gene predicted gene, 24631
Gm47575 9 106013530 to 106014653 1123 + antisense lncRNA gene predicted gene, 47575
Tssr91274 9 106040772 to 106040812 40 - TSS region transcription start site region 91274
Tssr91275 9 106066498 to 106066515 17 - TSS region transcription start site region 91275
Tssr91276 9 106080204 to 106080216 12 - TSS region transcription start site region 91276
Tssr91277 9 106080314 to 106080321 7 - TSS region transcription start site region 91277
Gm36993 9 106095474 to 106098453 2979 + unclassified gene predicted gene, 36993
Tssr91278 9 106096739 to 106096744 5 - TSS region transcription start site region 91278
Tssr91279 9 106096776 to 106096791 15 - TSS region transcription start site region 91279
Tssr91280 9 106096811 to 106096823 12 - TSS region transcription start site region 91280
Cpgi22250 9 106099434 to 106099654 220 CpG island CpG island 22250
Tssr91281 9 106106181 to 106106207 26 - TSS region transcription start site region 91281
Tssr91282 9 106112482 to 106112486 4 - TSS region transcription start site region 91282
Gm9451 9 106121296 to 106121899 603 - pseudogene predicted gene 9451
Gm29208 9 106122079 to 106128095 6016 - lincRNA gene predicted gene 29208
Tssr3002 9 106127088 to 106127094 6 - TSS region transcription start site region 3002
Tssr91283 9 106133513 to 106133519 6 - TSS region transcription start site region 91283
Tssr91284 9 106133577 to 106133587 10 - TSS region transcription start site region 91284
Tssr91285 9 106133628 to 106133635 7 - TSS region transcription start site region 91285
Tssr91286 9 106136014 to 106136019 5 - TSS region transcription start site region 91286
Tssr91287 9 106136049 to 106136068 19 - TSS region transcription start site region 91287
Tssr91288 9 106136358 to 106136362 4 - TSS region transcription start site region 91288
Tssr91289 9 106136365 to 106136373 8 - TSS region transcription start site region 91289
Tssr91290 9 106136375 to 106136389 14 - TSS region transcription start site region 91290
Tssr91291 9 106136397 to 106136401 4 - TSS region transcription start site region 91291
Tssr86850 9 106147942 to 106147955 13 + TSS region transcription start site region 86850
Tssr86851 9 106147967 to 106147983 16 + TSS region transcription start site region 86851
Tssr86852 9 106148308 to 106148332 24 + TSS region transcription start site region 86852
Cpgi22251 9 106148677 to 106149220 543 CpG island CpG island 22251
D030055H07Rik 9 106148687 to 106160201 11514 + antisense lncRNA gene RIKEN cDNA D030055H07 gene
Tssr86853 9 106148692 to 106148712 20 + TSS region transcription start site region 86853
Glyctk 9 106152857 to 106158138 5281 - protein coding gene glycerate kinase
Mir135a-1 9 106154124 to 106154213 89 + miRNA gene microRNA 135a-1
Tssr91292 9 106158109 to 106158132 23 - TSS region transcription start site region 91292
Tssr91293 9 106158134 to 106158141 7 - TSS region transcription start site region 91293
Cpgi22252 9 106159757 to 106160194 437 CpG island CpG island 22252
Tssr91294 9 106159894 to 106159916 22 - TSS region transcription start site region 91294
Tssr3003 9 106160036 to 106160067 31 + TSS region transcription start site region 3003
Tssr91295 9 106160120 to 106160143 23 - TSS region transcription start site region 91295
Tssr86854 9 106165997 to 106166009 12 + TSS region transcription start site region 86854
Cpgi22253 9 106170546 to 106171891 1345 CpG island CpG island 22253