Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:103556695-105576706

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192 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tmem108 9 103482947 to 103761837 278890 - protein coding gene transmembrane protein 108
4932413F04Rik 9 103557090 to 103565891 8801 + antisense lncRNA gene RIKEN cDNA 4932413F04 gene
Gm32682 9 103573387 to 103602847 29460 + lncRNA gene predicted gene, 32682
Gm38032 9 103598576 to 103600164 1588 - unclassified gene predicted gene, 38032
D9Mit14.1 9 103600890 to 103601062 172 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 14.1
D9Mit14 9 103601139 to 103601214 75 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 14
Tssr91224 9 103692759 to 103692770 11 - TSS region transcription start site region 91224
Tssr91225 9 103692785 to 103692812 27 - TSS region transcription start site region 91225
Cpgi22236 9 103708759 to 103708940 181 CpG island CpG island 22236
Gm46129 9 103709884 to 103732771 22887 + lncRNA gene predicted gene, 46129
Tssr86802 9 103721263 to 103721306 43 + TSS region transcription start site region 86802
Tssr91226 9 103729367 to 103729403 36 - TSS region transcription start site region 91226
Siim2 9 103748483 to 103748483 0 QTL stress induced immobility 2
Cpgi22237 9 103761092 to 103762139 1047 CpG island CpG island 22237
Tssr91227 9 103761788 to 103761816 28 - TSS region transcription start site region 91227
Tssr91228 9 103761820 to 103761847 27 - TSS region transcription start site region 91228
D9Mgc28 9 103769753 to 103769941 188 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 28
D9Dcr46 9 103809390 to 103809490 100 DNA segment DNA segment, Chr 9, Derry C. Roopenian 46
D9Dcr47 9 103855075 to 103855173 98 DNA segment DNA segment, Chr 9, Derry C. Roopenian 47
Gm5372 9 103888009 to 103888417 408 + pseudogene predicted gene 5372
D9Mgc29 9 103888420 to 103888554 134 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 29
Gm29154 9 103919392 to 103960323 40931 - lincRNA gene predicted gene 29154
D9Dcr48 9 103921311 to 103921411 100 DNA segment DNA segment, Chr 9, Derry C. Roopenian 48
Gm32797 9 103944958 to 103948602 3644 + lncRNA gene predicted gene, 32797
Gm33054 9 104001760 to 104002339 579 - lincRNA gene predicted gene, 33054
Cpgi22238 9 104002048 to 104003362 1314 CpG island CpG island 22238
Tssr91229 9 104002350 to 104002362 12 - TSS region transcription start site region 91229
Nphp3 9 104002544 to 104043811 41267 + protein coding gene nephronophthisis 3 (adolescent)
Tssr86803 9 104002725 to 104002776 51 + TSS region transcription start site region 86803
D9Mgc30 9 104032462 to 104032607 145 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 30
Tssr86804 9 104035510 to 104035533 23 + TSS region transcription start site region 86804
Gm28305 9 104040662 to 104075879 35217 + protein coding gene predicted gene 28305
Gm37200 9 104043605 to 104045776 2171 - unclassified gene predicted gene, 37200
Gm18998 9 104045718 to 104046359 641 + pseudogene predicted gene, 18998
Uba5 9 104046599 to 104063134 16535 - protein coding gene ubiquitin-like modifier activating enzyme 5
Gm37750 9 104053327 to 104053455 128 + unclassified gene predicted gene, 37750
Cpgi22239 9 104062544 to 104063834 1290 CpG island CpG island 22239
Tssr91230 9 104063049 to 104063146 97 - TSS region transcription start site region 91230
Tssr86805 9 104063376 to 104063415 39 + TSS region transcription start site region 86805
Tssr86806 9 104063678 to 104063710 32 + TSS region transcription start site region 86806
Acad11 9 104063703 to 104127646 63943 + protein coding gene acyl-Coenzyme A dehydrogenase family, member 11
Tssr86807 9 104063716 to 104063736 20 + TSS region transcription start site region 86807
Tssr86808 9 104074064 to 104074070 6 + TSS region transcription start site region 86808
Tssr86809 9 104076403 to 104076438 35 + TSS region transcription start site region 86809
D9Dcr49 9 104076611 to 104076706 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 49
Ackr4 9 104097682 to 104126643 28961 - protein coding gene atypical chemokine receptor 4
Gm47000 9 104101135 to 104101613 478 + unclassified gene predicted gene, 47000
Tssr91231 9 104102316 to 104102340 24 - TSS region transcription start site region 91231
Tssr91232 9 104102342 to 104102363 21 - TSS region transcription start site region 91232
Tssr91233 9 104102428 to 104102447 19 - TSS region transcription start site region 91233
Tssr91234 9 104102550 to 104102568 18 - TSS region transcription start site region 91234
Tssr2998 9 104102578 to 104102611 33 - TSS region transcription start site region 2998
Tssr91235 9 104103001 to 104103016 15 - TSS region transcription start site region 91235
Gm46999 9 104104436 to 104104800 364 + unclassified gene predicted gene, 46999
D9Mit148 9 104115679 to 104115825 146 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 148
D9Dcr50 9 104115730 to 104115829 99 DNA segment DNA segment, Chr 9, Derry C. Roopenian 50
Tssr86810 9 104116104 to 104116105 1 + TSS region transcription start site region 86810
D9Dcr51 9 104122763 to 104122857 94 DNA segment DNA segment, Chr 9, Derry C. Roopenian 51
Dnajc13 9 104151597 to 104263172 111575 - protein coding gene DnaJ heat shock protein family (Hsp40) member C13
D9Dcr52 9 104163459 to 104163563 104 DNA segment DNA segment, Chr 9, Derry C. Roopenian 52
Hmgb1-rs16 9 104169418 to 104169874 456 - pseudogene high mobility group box 1, related sequence 16
Gm46130 9 104181126 to 104205330 24204 + lncRNA gene predicted gene, 46130
Tssr91236 9 104186584 to 104186597 13 - TSS region transcription start site region 91236
Tssr91237 9 104213863 to 104213900 37 - TSS region transcription start site region 91237
Gm37563 9 104262105 to 104263617 1512 + unclassified gene predicted gene, 37563
Tssr91238 9 104262246 to 104262267 21 - TSS region transcription start site region 91238
Cpgi22240 9 104262313 to 104263489 1176 CpG island CpG island 22240
Tssr91239 9 104262423 to 104262431 8 - TSS region transcription start site region 91239
Tssr91240 9 104262900 to 104262949 49 - TSS region transcription start site region 91240
Tssr91241 9 104262960 to 104262971 11 - TSS region transcription start site region 91241
Tssr86811 9 104263223 to 104263243 20 + TSS region transcription start site region 86811
Tssr86812 9 104263273 to 104263293 20 + TSS region transcription start site region 86812
D9Dcr53 9 104267800 to 104267900 100 DNA segment DNA segment, Chr 9, Derry C. Roopenian 53
Acpp 9 104288240 to 104337722 49482 - protein coding gene acid phosphatase, prostate
D9Mgc31 9 104288402 to 104288582 180 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 31
Tssr91242 9 104300083 to 104300096 13 - TSS region transcription start site region 91242
D9Dcr54 9 104307641 to 104307742 101 DNA segment DNA segment, Chr 9, Derry C. Roopenian 54
Tssr91243 9 104320053 to 104320080 27 - TSS region transcription start site region 91243
Tssr91244 9 104328023 to 104328024 1 - TSS region transcription start site region 91244
Tssr91245 9 104337700 to 104337733 33 - TSS region transcription start site region 91245
Tssr86813 9 104337846 to 104337872 26 + TSS region transcription start site region 86813
Tssr91246 9 104339132 to 104339137 5 - TSS region transcription start site region 91246
Gm28996 9 104344131 to 104344851 720 - pseudogene predicted gene 28996
Tssr86814 9 104355958 to 104356003 45 + TSS region transcription start site region 86814
Tssr86815 9 104361829 to 104361833 4 + TSS region transcription start site region 86815
Gm28548 9 104361832 to 104385031 23199 + lincRNA gene predicted gene 28548
Tssr86816 9 104361836 to 104361846 10 + TSS region transcription start site region 86816
Tssr86817 9 104361893 to 104361899 6 + TSS region transcription start site region 86817
n-TCgca47 9 104400120 to 104400191 71 + tRNA gene nuclear encoded tRNA cysteine 47 (anticodon GCA)
n-TCgca53 9 104404056 to 104404127 71 + tRNA gene nuclear encoded tRNA cysteine 53 (anticodon GCA)
n-TEttc8 9 104408667 to 104408738 71 - tRNA gene nuclear encoded tRNA glutamic acid 8 (anticodon TTC)
Cpgi22241 9 104409159 to 104409343 184 CpG island CpG island 22241
Mir2136 9 104426113 to 104426187 74 + miRNA gene microRNA 2136
D9Mit77 9 104427138 to 104427315 177 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 77
Gm25904 9 104481368 to 104481510 142 - snoRNA gene predicted gene, 25904
Tssr86818 9 104547267 to 104547295 28 + TSS region transcription start site region 86818
Cpne4 9 104566665 to 105034548 467883 + protein coding gene copine IV
Tssr86819 9 104566695 to 104566706 11 + TSS region transcription start site region 86819
Tssr86820 9 104566733 to 104566745 12 + TSS region transcription start site region 86820
Tssr86821 9 104566768 to 104566773 5 + TSS region transcription start site region 86821
Cpgi22242 9 104569463 to 104569673 210 CpG island CpG island 22242
Tssr86822 9 104569601 to 104569631 30 + TSS region transcription start site region 86822
Tssr86823 9 104569633 to 104569665 32 + TSS region transcription start site region 86823
Tssr86824 9 104569672 to 104569683 11 + TSS region transcription start site region 86824
Tssr86825 9 104569735 to 104569746 11 + TSS region transcription start site region 86825
Tssr86826 9 104569754 to 104569793 39 + TSS region transcription start site region 86826
Tssr86827 9 104569795 to 104569800 5 + TSS region transcription start site region 86827
Tssr86828 9 104588051 to 104588075 24 + TSS region transcription start site region 86828
D9Dcr55 9 104595465 to 104595564 99 DNA segment DNA segment, Chr 9, Derry C. Roopenian 55
Tssr2999 9 104727896 to 104727898 2 + TSS region transcription start site region 2999
D9Mit53 9 104782282 to 104782493 211 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 53
D9Dcr56 9 104782400 to 104782504 104 DNA segment DNA segment, Chr 9, Derry C. Roopenian 56
dcr 9 104782400 to 105554952 772552 heritable phenotypic marker decrepit
V25Dq6 9 104800000 to 104800000 0 QTL vitamin D inactive form serum level QTL 6
D9Dcr57 9 104842584 to 104842689 105 DNA segment DNA segment, Chr 9, Derry C. Roopenian 57
Tssr86829 9 104854457 to 104854474 17 + TSS region transcription start site region 86829
D9Dcr58 9 104899515 to 104899614 99 DNA segment DNA segment, Chr 9, Derry C. Roopenian 58
D9Dcr59 9 104905575 to 104905674 99 DNA segment DNA segment, Chr 9, Derry C. Roopenian 59
D9Dcr60 9 104951347 to 104951442 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 60
D9Dcr61 9 104984625 to 104984729 104 DNA segment DNA segment, Chr 9, Derry C. Roopenian 61
D9Dcr62 9 104994332 to 104994427 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 62
Gm23391 9 104994916 to 104995019 103 + miRNA gene predicted gene, 23391
D9Dcr63 9 105011298 to 105011394 96 DNA segment DNA segment, Chr 9, Derry C. Roopenian 63
Tssr86830 9 105018368 to 105018378 10 + TSS region transcription start site region 86830
Tssr86831 9 105018400 to 105018408 8 + TSS region transcription start site region 86831
Cpgi22243 9 105053156 to 105053561 405 CpG island CpG island 22243
Tssr86832 9 105053248 to 105053259 11 + TSS region transcription start site region 86832
Tssr86833 9 105053260 to 105053303 43 + TSS region transcription start site region 86833
Mrpl3 9 105053268 to 105077476 24208 + protein coding gene mitochondrial ribosomal protein L3
Gm38077 9 105064777 to 105068021 3244 + unclassified gene predicted gene, 38077
Gm47106 9 105064805 to 105088286 23481 - antisense lncRNA gene predicted gene, 47106
Gm47103 9 105085920 to 105087030 1110 + pseudogene predicted gene, 47103
Gm47102 9 105087075 to 105090181 3106 + pseudogene predicted gene, 47102
D9Mit80 9 105096928 to 105097075 147 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 80
Nudt16 9 105129332 to 105131843 2511 - protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 16
Cpgi22244 9 105131158 to 105132202 1044 CpG island CpG island 22244
Tssr91247 9 105131775 to 105131833 58 - TSS region transcription start site region 91247
D9Mit321 9 105137755 to 105137954 199 DNA segment DNA Segment, Chr 9, Massachusetts Institute of Technology-321
D9Dcr64 9 105141341 to 105141436 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 64
Nudt16l2 9 105143344 to 105145082 1738 - protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 16-like 2
Tssr91248 9 105145011 to 105145014 3 - TSS region transcription start site region 91248
Tssr91249 9 105145072 to 105145106 34 - TSS region transcription start site region 91249
Nek11 9 105162156 to 105395524 233368 - protein coding gene NIMA (never in mitosis gene a)-related expressed kinase 11
Gm37582 9 105163125 to 105164533 1408 + unclassified gene predicted gene, 37582
D9Dcr65 9 105179995 to 105180095 100 DNA segment DNA segment, Chr 9, Derry C. Roopenian 65
D9Dcr66 9 105185430 to 105185538 108 DNA segment DNA segment, Chr 9, Derry C. Roopenian 66
D9Dcr67 9 105198720 to 105198820 100 DNA segment DNA segment, Chr 9, Derry C. Roopenian 67
Gm20643 9 105208196 to 105211863 3667 + antisense lncRNA gene predicted gene 20643
D9Dcr68 9 105270667 to 105270767 100 DNA segment DNA segment, Chr 9, Derry C. Roopenian 68
D9Dcr69 9 105277892 to 105277996 104 DNA segment DNA segment, Chr 9, Derry C. Roopenian 69
Tssr3000 9 105316364 to 105316365 1 + TSS region transcription start site region 3000
Gm15619 9 105333513 to 105348916 15403 + antisense lncRNA gene predicted gene 15619
D9Dcr70 9 105360304 to 105360399 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 70
D9Dcr71 9 105365724 to 105365830 106 DNA segment DNA segment, Chr 9, Derry C. Roopenian 71
D9Dcr73 9 105380558 to 105380653 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 73
Cpgi22245 9 105395076 to 105395802 726 CpG island CpG island 22245
Tssr91250 9 105395237 to 105395289 52 - TSS region transcription start site region 91250
Aste1 9 105395294 to 105408298 13004 + protein coding gene asteroid homolog 1
Tssr86834 9 105395309 to 105395345 36 + TSS region transcription start site region 86834
Tssr86835 9 105395348 to 105395411 63 + TSS region transcription start site region 86835
Tssr86836 9 105395519 to 105395563 44 + TSS region transcription start site region 86836
Tssr86837 9 105395564 to 105395602 38 + TSS region transcription start site region 86837
Atp2c1 9 105411362 to 105521257 109895 - protein coding gene ATPase, Ca++-sequestering
Tssr91251 9 105412492 to 105412495 3 - TSS region transcription start site region 91251
Tssr91252 9 105420446 to 105420457 11 - TSS region transcription start site region 91252
Tssr91253 9 105428288 to 105428293 5 - TSS region transcription start site region 91253
D9Dcr74 9 105435217 to 105435312 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 74
Tssr86838 9 105470488 to 105470499 11 + TSS region transcription start site region 86838
Tssr86839 9 105470514 to 105470525 11 + TSS region transcription start site region 86839
Gm19667 9 105470520 to 105480194 9674 + antisense lncRNA gene predicted gene, 19667
Tssr86840 9 105470535 to 105470540 5 + TSS region transcription start site region 86840
D9Dcr75 9 105479812 to 105479924 112 DNA segment DNA segment, Chr 9, Derry C. Roopenian 75
Tssr91254 9 105480181 to 105480194 13 - TSS region transcription start site region 91254
Tssr86841 9 105483155 to 105483159 4 + TSS region transcription start site region 86841
Tssr86842 9 105491895 to 105491902 7 + TSS region transcription start site region 86842
Cpgi22246 9 105494414 to 105495820 1406 CpG island CpG island 22246
Tssr91255 9 105494962 to 105494997 35 - TSS region transcription start site region 91255
Tssr91256 9 105495037 to 105495117 80 - TSS region transcription start site region 91256
Tssr91257 9 105495130 to 105495146 16 - TSS region transcription start site region 91257
Tssr91258 9 105495153 to 105495189 36 - TSS region transcription start site region 91258
Tssr86843 9 105495232 to 105495249 17 + TSS region transcription start site region 86843
Tssr91259 9 105495475 to 105495489 14 - TSS region transcription start site region 91259
Gm40564 9 105495992 to 105497198 1206 + lncRNA gene predicted gene, 40564
Tssr91260 9 105521237 to 105521265 28 - TSS region transcription start site region 91260
Tssr91261 9 105521333 to 105521369 36 - TSS region transcription start site region 91261
Gm7436 9 105545437 to 105545827 390 - pseudogene predicted gene 7436
D9Dcr76 9 105554851 to 105554952 101 DNA segment DNA segment, Chr 9, Derry C. Roopenian 76
D9Dcr77 9 105558742 to 105558855 113 DNA segment DNA segment, Chr 9, Derry C. Roopenian 77
Gm5621 9 105560122 to 105560761 639 - pseudogene predicted gene 5621
Tssr91262 9 105560804 to 105560813 9 - TSS region transcription start site region 91262
D9Dcr78 9 105564625 to 105564721 96 DNA segment DNA segment, Chr 9, Derry C. Roopenian 78
D9Dcr79 9 105570807 to 105570911 104 DNA segment DNA segment, Chr 9, Derry C. Roopenian 79