Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 9:103539390-104079490

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47 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tmem108 9 103482947 to 103761837 278890 - protein coding gene transmembrane protein 108
Gm32743 9 103521787 to 103545977 24190 + antisense lncRNA gene predicted gene, 32743
Gm37649 9 103541303 to 103543534 2231 - unclassified gene predicted gene, 37649
4932413F04Rik 9 103557090 to 103565891 8801 + antisense lncRNA gene RIKEN cDNA 4932413F04 gene
Gm32682 9 103573387 to 103602847 29460 + lncRNA gene predicted gene, 32682
Gm38032 9 103598576 to 103600164 1588 - unclassified gene predicted gene, 38032
D9Mit14.1 9 103600890 to 103601062 172 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 14.1
D9Mit14 9 103601139 to 103601214 75 DNA segment DNA segment, Chr 9, Massachusetts Institute of Technology 14
Tssr91224 9 103692759 to 103692770 11 - TSS region transcription start site region 91224
Tssr91225 9 103692785 to 103692812 27 - TSS region transcription start site region 91225
Cpgi22236 9 103708759 to 103708940 181 CpG island CpG island 22236
Gm46129 9 103709884 to 103732771 22887 + lncRNA gene predicted gene, 46129
Tssr86802 9 103721263 to 103721306 43 + TSS region transcription start site region 86802
Tssr91226 9 103729367 to 103729403 36 - TSS region transcription start site region 91226
Siim2 9 103748483 to 103748483 0 QTL stress induced immobility 2
Cpgi22237 9 103761092 to 103762139 1047 CpG island CpG island 22237
Tssr91227 9 103761788 to 103761816 28 - TSS region transcription start site region 91227
Tssr91228 9 103761820 to 103761847 27 - TSS region transcription start site region 91228
D9Mgc28 9 103769753 to 103769941 188 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 28
D9Dcr46 9 103809390 to 103809490 100 DNA segment DNA segment, Chr 9, Derry C. Roopenian 46
D9Dcr47 9 103855075 to 103855173 98 DNA segment DNA segment, Chr 9, Derry C. Roopenian 47
Gm5372 9 103888009 to 103888417 408 + pseudogene predicted gene 5372
D9Mgc29 9 103888420 to 103888554 134 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 29
Gm29154 9 103919392 to 103960323 40931 - lincRNA gene predicted gene 29154
D9Dcr48 9 103921311 to 103921411 100 DNA segment DNA segment, Chr 9, Derry C. Roopenian 48
Gm32797 9 103944958 to 103948602 3644 + lncRNA gene predicted gene, 32797
Gm33054 9 104001760 to 104002339 579 - lincRNA gene predicted gene, 33054
Cpgi22238 9 104002048 to 104003362 1314 CpG island CpG island 22238
Tssr91229 9 104002350 to 104002362 12 - TSS region transcription start site region 91229
Nphp3 9 104002544 to 104043811 41267 + protein coding gene nephronophthisis 3 (adolescent)
Tssr86803 9 104002725 to 104002776 51 + TSS region transcription start site region 86803
D9Mgc30 9 104032462 to 104032607 145 DNA segment DNA segment, Chr 9, MRC UK Mouse Genome Centre 30
Tssr86804 9 104035510 to 104035533 23 + TSS region transcription start site region 86804
Gm28305 9 104040662 to 104075879 35217 + protein coding gene predicted gene 28305
Gm37200 9 104043605 to 104045776 2171 - unclassified gene predicted gene, 37200
Gm18998 9 104045718 to 104046359 641 + pseudogene predicted gene, 18998
Uba5 9 104046599 to 104063134 16535 - protein coding gene ubiquitin-like modifier activating enzyme 5
Gm37750 9 104053327 to 104053455 128 + unclassified gene predicted gene, 37750
Cpgi22239 9 104062544 to 104063834 1290 CpG island CpG island 22239
Tssr91230 9 104063049 to 104063146 97 - TSS region transcription start site region 91230
Tssr86805 9 104063376 to 104063415 39 + TSS region transcription start site region 86805
Tssr86806 9 104063678 to 104063710 32 + TSS region transcription start site region 86806
Acad11 9 104063703 to 104127646 63943 + protein coding gene acyl-Coenzyme A dehydrogenase family, member 11
Tssr86807 9 104063716 to 104063736 20 + TSS region transcription start site region 86807
Tssr86808 9 104074064 to 104074070 6 + TSS region transcription start site region 86808
Tssr86809 9 104076403 to 104076438 35 + TSS region transcription start site region 86809
D9Dcr49 9 104076611 to 104076706 95 DNA segment DNA segment, Chr 9, Derry C. Roopenian 49