Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:91801253-92701259

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73 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
nmf242 8 84220392 to 92685497 8465105 heritable phenotypic marker neuroscience mutagenesis facility, 242
Irx3 8 91798511 to 91801654 3143 - protein coding gene Iroquois related homeobox 3
Cpgi20813 8 91799330 to 91802515 3185 CpG island CpG island 20813
Tssr82417 8 91801374 to 91801389 15 - TSS region transcription start site region 82417
Tssr82418 8 91801422 to 91801467 45 - TSS region transcription start site region 82418
Tssr82419 8 91801475 to 91801486 11 - TSS region transcription start site region 82419
Tssr82420 8 91801547 to 91801560 13 - TSS region transcription start site region 82420
Tssr82421 8 91801587 to 91801611 24 - TSS region transcription start site region 82421
Tssr2644 8 91801617 to 91801637 20 - TSS region transcription start site region 2644
Tssr82422 8 91801880 to 91801892 12 - TSS region transcription start site region 82422
Tssr82423 8 91801900 to 91801914 14 - TSS region transcription start site region 82423
Tssr82424 8 91801915 to 91801940 25 - TSS region transcription start site region 82424
Tssr82425 8 91801948 to 91801970 22 - TSS region transcription start site region 82425
Irx3os 8 91804234 to 91807377 3143 + antisense lncRNA gene iroquois homeobox 3, opposite strand
Cpgi20814 8 91804307 to 91804796 489 CpG island CpG island 20814
Cpgi20815 8 91805272 to 91805751 479 CpG island CpG island 20815
Cpgi20816 8 91806244 to 91806719 475 CpG island CpG island 20816
Gm39223 8 91822584 to 91830637 8053 + lncRNA gene predicted gene, 39223
Gm28511 8 91865871 to 91872995 7124 + lincRNA gene predicted gene 28511
Cpgi20817 8 91872703 to 91872897 194 CpG island CpG island 20817
Gm28515 8 91907565 to 91913066 5501 - lincRNA gene predicted gene 28515
D8Mit147 8 91954072 to 91954211 139 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 147
Gm36670 8 91974263 to 91991849 17586 - lincRNA gene predicted gene, 36670
Gm36843 8 91997594 to 92009006 11412 + lincRNA gene predicted gene, 36843
Gm28516 8 92024442 to 92038438 13996 + lincRNA gene predicted gene 28516
Gm24254 8 92039917 to 92040020 103 + snRNA gene predicted gene, 24254
Tssr82426 8 92059691 to 92059695 4 - TSS region transcription start site region 82426
D8Mit1006 8 92070043 to 92070192 149 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 1006
Tssr78739 8 92097311 to 92097317 6 + TSS region transcription start site region 78739
Gm45332 8 92152096 to 92158266 6170 - lincRNA gene predicted gene 45332
Tssr82427 8 92158274 to 92158283 9 - TSS region transcription start site region 82427
Gm45335 8 92172587 to 92189124 16537 + lincRNA gene predicted gene 45335
Tssr78740 8 92189429 to 92189440 11 + TSS region transcription start site region 78740
Tssr78741 8 92189450 to 92189466 16 + TSS region transcription start site region 78741
Tssr78742 8 92193362 to 92193367 5 + TSS region transcription start site region 78742
Gm45334 8 92233125 to 92247959 14834 + lincRNA gene predicted gene 45334
Tssr2645 8 92251253 to 92251259 6 - TSS region transcription start site region 2645
Crnde 8 92326033 to 92356120 30087 - lncRNA gene colorectal neoplasia differentially expressed (non-protein coding)
Gm21817 8 92336668 to 92339250 2582 - lincRNA gene predicted gene, 21817
Tssr82428 8 92354580 to 92354604 24 - TSS region transcription start site region 82428
Tssr82429 8 92355495 to 92355506 11 - TSS region transcription start site region 82429
Cpgi20818 8 92355587 to 92360909 5322 CpG island CpG island 20818
Tssr82430 8 92355836 to 92355852 16 - TSS region transcription start site region 82430
Tssr2646 8 92355856 to 92355879 23 - TSS region transcription start site region 2646
Tssr82431 8 92355885 to 92355915 30 - TSS region transcription start site region 82431
Tssr78743 8 92355963 to 92356009 46 + TSS region transcription start site region 78743
Tssr82432 8 92356103 to 92356119 16 - TSS region transcription start site region 82432
Tssr82433 8 92356122 to 92356143 21 - TSS region transcription start site region 82433
Tssr82434 8 92357582 to 92357605 23 - TSS region transcription start site region 82434
Tssr78744 8 92357740 to 92357751 11 + TSS region transcription start site region 78744
Tssr78745 8 92357787 to 92357801 14 + TSS region transcription start site region 78745
Irx5 8 92357796 to 92361456 3660 + protein coding gene Iroquois homeobox 5
Tssr78746 8 92357834 to 92357891 57 + TSS region transcription start site region 78746
Tssr78747 8 92357973 to 92357988 15 + TSS region transcription start site region 78747
Tssr78748 8 92358003 to 92358011 8 + TSS region transcription start site region 78748
Tssr78749 8 92358308 to 92358327 19 + TSS region transcription start site region 78749
Cpgi20819 8 92363370 to 92363678 308 CpG island CpG island 20819
Cpgi20820 8 92365502 to 92365889 387 CpG island CpG island 20820
Cpgi20821 8 92366529 to 92366899 370 CpG island CpG island 20821
Cpgi20822 8 92460050 to 92461353 1303 CpG island CpG island 20822
Gm45336 8 92465767 to 92469665 3898 + lincRNA gene predicted gene 45336
D8Mit267 8 92548074 to 92548180 106 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 267
Tssr78750 8 92549273 to 92549274 1 + TSS region transcription start site region 78750
Cpgi20823 8 92673362 to 92675031 1669 CpG island CpG island 20823
Irx6 8 92674289 to 92680956 6667 + protein coding gene Iroquois homeobox 6
D8Mit284 8 92675517 to 92675623 106 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 284
Lith18 8 92675517 to 92675623 106 QTL lithogenic gene 18
Cpgi20824 8 92678251 to 92678667 416 CpG island CpG island 20824
Gm45505 8 92680172 to 92682194 2022 - antisense lncRNA gene predicted gene 45505
Nhdlq14 8 92685348 to 92685497 149 QTL non-HDL QTL 14
Hdlq16 8 92685348 to 92685497 149 QTL HDL QTL 16
Obq16 8 92685348 to 92685497 149 QTL obesity QTL 16
D8Mit248 8 92685348 to 92685497 149 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 248