Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:89056429-90496432

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45 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Char2a 8 71136783 to 90202598 19065815 QTL P. chabaudi malaria resistance QTL 2a
Gm3134 8 89039976 to 89071021 31045 + lncRNA gene predicted gene 3134
Gm35358 8 89085418 to 89130837 45419 - lncRNA gene predicted gene, 35358
Tssr2636 8 89130328 to 89130346 18 + TSS region transcription start site region 2636
Tssr2637 8 89130943 to 89130944 1 + TSS region transcription start site region 2637
Gm35305 8 89137153 to 89142424 5271 + lncRNA gene predicted gene, 35305
Gm6625 8 89146787 to 89147058 271 - pseudogene predicted gene 6625
Tssr82391 8 89147248 to 89147251 3 - TSS region transcription start site region 82391
Gm5356 8 89186946 to 89187560 614 - pseudogene predicted pseudogene 5356
D8Mit81 8 89203615 to 89203750 135 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 81
Gm35542 8 89219478 to 89230325 10847 + lncRNA gene predicted gene, 35542
Cpgi20801 8 89272345 to 89272821 476 CpG island CpG island 20801
D8Mit50 8 89351668 to 89351811 143 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 50
Tssr2638 8 89427219 to 89427246 27 + TSS region transcription start site region 2638
Gm35593 8 89427227 to 89462515 35288 + lncRNA gene predicted gene, 35593
Cpgi20802 8 89571948 to 89572114 166 CpG island CpG island 20802
Tssr2639 8 89580206 to 89580209 3 + TSS region transcription start site region 2639
Gm26331 8 89589435 to 89589541 106 - snRNA gene predicted gene, 26331
Gm24212 8 89667173 to 89667304 131 - snoRNA gene predicted gene, 24212
D8Mit307 8 89691871 to 89691948 77 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 307
Tssr78681 8 89776429 to 89776432 3 + TSS region transcription start site region 78681
Tssr82392 8 89824661 to 89824674 13 - TSS region transcription start site region 82392
Tssr78682 8 89995914 to 89995918 4 + TSS region transcription start site region 78682
D8Mit197 8 90024955 to 90025070 115 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 197
D8Mit308 8 90108164 to 90108272 108 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 308
Pitm3 8 90202495 to 90202598 103 QTL prion incubation time 3
D8Mit266 8 90202495 to 90202598 103 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 266
D8Mit107 8 90236541 to 90236690 149 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 107
Tox3 8 90247040 to 90348343 101303 - protein coding gene TOX high mobility group box family member 3
Tssr82393 8 90298404 to 90298409 5 - TSS region transcription start site region 82393
Tssr82394 8 90301362 to 90301366 4 - TSS region transcription start site region 82394
Tssr82395 8 90325926 to 90325938 12 - TSS region transcription start site region 82395
Tssr82396 8 90347194 to 90347201 7 - TSS region transcription start site region 82396
Cpgi20803 8 90347393 to 90348971 1578 CpG island CpG island 20803
Tssr2640 8 90348126 to 90348160 34 - TSS region transcription start site region 2640
Tssr82397 8 90348278 to 90348302 24 - TSS region transcription start site region 82397
Tssr82398 8 90348343 to 90348386 43 - TSS region transcription start site region 82398
Gm39219 8 90355284 to 90359600 4316 - lncRNA gene predicted gene, 39219
4930405E02Rik 8 90359702 to 90361757 2055 unclassified non-coding RNA gene RIKEN cDNA 4930405E02 gene
Gm46048 8 90417185 to 90420255 3070 - lncRNA gene predicted gene, 46048
Gm35797 8 90480943 to 90491058 10115 - lncRNA gene predicted gene, 35797
Tssr78683 8 90493055 to 90493066 11 + TSS region transcription start site region 78683
Tssr78684 8 90493097 to 90493100 3 + TSS region transcription start site region 78684
Tssr78685 8 90493104 to 90493116 12 + TSS region transcription start site region 78685
Tssr78686 8 90493125 to 90493131 6 + TSS region transcription start site region 78686