Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:70584044-70864059

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189 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ell 8 70539675 to 70592858 53183 + protein coding gene elongation factor RNA polymerase II
Cpgi20472 8 70594055 to 70595544 1489 CpG island CpG island 20472
Tssr77768 8 70594176 to 70594210 34 + TSS region transcription start site region 77768
Tssr77769 8 70594361 to 70594372 11 + TSS region transcription start site region 77769
Tssr77770 8 70594375 to 70594396 21 + TSS region transcription start site region 77770
Tssr77771 8 70594401 to 70594412 11 + TSS region transcription start site region 77771
Tssr77772 8 70594425 to 70594440 15 + TSS region transcription start site region 77772
Tssr77773 8 70594466 to 70594512 46 + TSS region transcription start site region 77773
Isyna1 8 70594481 to 70597290 2809 + protein coding gene myo-inositol 1-phosphate synthase A1
Tssr77774 8 70594613 to 70594649 36 + TSS region transcription start site region 77774
Tssr77775 8 70595044 to 70595073 29 + TSS region transcription start site region 77775
Tssr77776 8 70596825 to 70596851 26 + TSS region transcription start site region 77776
Ssbp4 8 70597485 to 70608381 10896 - protein coding gene single stranded DNA binding protein 4
Cpgi20473 8 70597547 to 70599210 1663 CpG island CpG island 20473
Tssr81632 8 70598424 to 70598441 17 - TSS region transcription start site region 81632
Tssr81633 8 70599414 to 70599442 28 - TSS region transcription start site region 81633
Tssr81634 8 70599724 to 70599746 22 - TSS region transcription start site region 81634
Cpgi20474 8 70601318 to 70601591 273 CpG island CpG island 20474
Tssr81635 8 70601329 to 70601370 41 - TSS region transcription start site region 81635
Cpgi20475 8 70607598 to 70608767 1169 CpG island CpG island 20475
Tssr81636 8 70608261 to 70608330 69 - TSS region transcription start site region 81636
Cpgi20476 8 70609006 to 70610484 1478 CpG island CpG island 20476
Tssr77777 8 70610390 to 70610412 22 + TSS region transcription start site region 77777
Gm45546 8 70610425 to 70612818 2393 + unclassified gene predicted gene 45546
Tssr77778 8 70610699 to 70610718 19 + TSS region transcription start site region 77778
Cpgi20477 8 70610912 to 70611880 968 CpG island CpG island 20477
Tssr77779 8 70616102 to 70616113 11 + TSS region transcription start site region 77779
Tssr77780 8 70616114 to 70616140 26 + TSS region transcription start site region 77780
Tssr77781 8 70616147 to 70616161 14 + TSS region transcription start site region 77781
Tssr77782 8 70616666 to 70616684 18 + TSS region transcription start site region 77782
Tssr81637 8 70616715 to 70616741 26 - TSS region transcription start site region 81637
Tssr77783 8 70616816 to 70616930 114 + TSS region transcription start site region 77783
Lrrc25 8 70616844 to 70620850 4006 + protein coding gene leucine rich repeat containing 25
Tssr77784 8 70616937 to 70616948 11 + TSS region transcription start site region 77784
Tssr77785 8 70616975 to 70616986 11 + TSS region transcription start site region 77785
Tssr77786 8 70617721 to 70617740 19 + TSS region transcription start site region 77786
Tssr77787 8 70617797 to 70617829 32 + TSS region transcription start site region 77787
Tssr77788 8 70617912 to 70617970 58 + TSS region transcription start site region 77788
Tssr77789 8 70618091 to 70618107 16 + TSS region transcription start site region 77789
Tssr77790 8 70618137 to 70618170 33 + TSS region transcription start site region 77790
Tssr81638 8 70618774 to 70618809 35 - TSS region transcription start site region 81638
Tssr77791 8 70619183 to 70619193 10 + TSS region transcription start site region 77791
Cpgi20478 8 70620892 to 70621091 199 CpG island CpG island 20478
Gdf15 8 70629393 to 70632456 3063 - protein coding gene growth differentiation factor 15
Cpgi20479 8 70629512 to 70630398 886 CpG island CpG island 20479
Cpgi20480 8 70631295 to 70631728 433 CpG island CpG island 20480
Tssr81639 8 70631631 to 70631640 9 - TSS region transcription start site region 81639
Tssr81640 8 70632419 to 70632461 42 - TSS region transcription start site region 81640
Gm34154 8 70632518 to 70637910 5392 + lncRNA gene predicted gene, 34154
Tssr81641 8 70638868 to 70638879 11 - TSS region transcription start site region 81641
Pgpep1 8 70646436 to 70659856 13420 - protein coding gene pyroglutamyl-peptidase I
Tssr81642 8 70647126 to 70647133 7 - TSS region transcription start site region 81642
Tssr81643 8 70648373 to 70648377 4 - TSS region transcription start site region 81643
Tssr77792 8 70649540 to 70649549 9 + TSS region transcription start site region 77792
Tssr77793 8 70649644 to 70649665 21 + TSS region transcription start site region 77793
Tssr81644 8 70650419 to 70650431 12 - TSS region transcription start site region 81644
Cpgi20481 8 70659094 to 70660367 1273 CpG island CpG island 20481
Tssr81645 8 70659645 to 70659696 51 - TSS region transcription start site region 81645
Tssr81646 8 70659823 to 70659839 16 - TSS region transcription start site region 81646
Tssr77794 8 70659965 to 70659980 15 + TSS region transcription start site region 77794
Cpgi20482 8 70672974 to 70673788 814 CpG island CpG island 20482
Tssr77795 8 70673198 to 70673267 69 + TSS region transcription start site region 77795
Lsm4 8 70673248 to 70678752 5504 + protein coding gene LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated
Tssr77796 8 70673364 to 70673428 64 + TSS region transcription start site region 77796
Tssr77797 8 70673738 to 70673759 21 + TSS region transcription start site region 77797
Tssr77798 8 70673768 to 70673784 16 + TSS region transcription start site region 77798
Tssr2599 8 70676184 to 70676222 38 + TSS region transcription start site region 2599
Cpgi20483 8 70682309 to 70682509 200 CpG island CpG island 20483
Gm39191 8 70683309 to 70692591 9282 - lncRNA gene predicted gene, 39191
Cpgi20484 8 70691853 to 70692296 443 CpG island CpG island 20484
Cpgi20485 8 70695422 to 70695680 258 CpG island CpG island 20485
Cpgi20486 8 70696539 to 70697011 472 CpG island CpG island 20486
Cpgi20487 8 70698292 to 70700323 2031 CpG island CpG island 20487
Tssr81647 8 70698317 to 70698327 10 - TSS region transcription start site region 81647
Tssr81648 8 70698334 to 70698364 30 - TSS region transcription start site region 81648
Tssr77799 8 70698526 to 70698545 19 + TSS region transcription start site region 77799
Tssr77800 8 70698931 to 70698945 14 + TSS region transcription start site region 77800
Jund 8 70698949 to 70700616 1667 + protein coding gene jun D proto-oncogene
Tssr2600 8 70699154 to 70699161 7 + TSS region transcription start site region 2600
Gm11175 8 70699162 to 70700080 918 - antisense lncRNA gene predicted gene 11175
Tssr81649 8 70699821 to 70699869 48 - TSS region transcription start site region 81649
Tssr81650 8 70699996 to 70700067 71 - TSS region transcription start site region 81650
Tssr81651 8 70700070 to 70700088 18 - TSS region transcription start site region 81651
Tssr81652 8 70700196 to 70700233 37 - TSS region transcription start site region 81652
Tssr77801 8 70700207 to 70700214 7 + TSS region transcription start site region 77801
Tssr77802 8 70700293 to 70700298 5 + TSS region transcription start site region 77802
Tssr81653 8 70700403 to 70700418 15 - TSS region transcription start site region 81653
Tssr81654 8 70700447 to 70700461 14 - TSS region transcription start site region 81654
Cpgi20488 8 70700628 to 70700941 313 CpG island CpG island 20488
Tssr77803 8 70703423 to 70703433 10 + TSS region transcription start site region 77803
Tssr77804 8 70703435 to 70703473 38 + TSS region transcription start site region 77804
Iqcn 8 70703457 to 70717650 14193 + protein coding gene IQ motif containing N
Tssr77805 8 70703478 to 70703499 21 + TSS region transcription start site region 77805
Tssr77806 8 70703517 to 70703523 6 + TSS region transcription start site region 77806
Tssr77807 8 70704039 to 70704044 5 + TSS region transcription start site region 77807
Tssr77808 8 70704047 to 70704064 17 + TSS region transcription start site region 77808
Gm34255 8 70708458 to 70724507 16049 - lncRNA gene predicted gene, 34255
Tssr77809 8 70715753 to 70715759 6 + TSS region transcription start site region 77809
Cpgi20489 8 70718369 to 70718716 347 CpG island CpG island 20489
Tssr77810 8 70718509 to 70718520 11 + TSS region transcription start site region 77810
Tssr77811 8 70718534 to 70718549 15 + TSS region transcription start site region 77811
Gm3336 8 70718543 to 70722634 4091 + protein coding gene predicted gene 3336
Tssr81655 8 70723539 to 70723573 34 - TSS region transcription start site region 81655
Tssr81656 8 70723587 to 70723605 18 - TSS region transcription start site region 81656
Tssr77812 8 70724044 to 70724059 15 + TSS region transcription start site region 77812
Pde4c 8 70724064 to 70751186 27122 + protein coding gene phosphodiesterase 4C, cAMP specific
Tssr77813 8 70724067 to 70724078 11 + TSS region transcription start site region 77813
Tssr77814 8 70724109 to 70724122 13 + TSS region transcription start site region 77814
Tssr77815 8 70724176 to 70724185 9 + TSS region transcription start site region 77815
Cpgi20490 8 70729828 to 70730499 671 CpG island CpG island 20490
Cpgi20491 8 70742998 to 70743719 721 CpG island CpG island 20491
Tssr77816 8 70743108 to 70743114 6 + TSS region transcription start site region 77816
Cpgi20492 8 70743746 to 70744653 907 CpG island CpG island 20492
Cpgi20493 8 70745098 to 70745486 388 CpG island CpG island 20493
Cpgi20494 8 70753246 to 70753644 398 CpG island CpG island 20494
Cpgi20495 8 70754423 to 70755660 1237 CpG island CpG island 20495
Tssr77817 8 70754679 to 70754751 72 + TSS region transcription start site region 77817
Rab3a 8 70754679 to 70758677 3998 + protein coding gene RAB3A, member RAS oncogene family
Tssr77818 8 70755880 to 70755892 12 + TSS region transcription start site region 77818
Tssr77819 8 70755950 to 70755968 18 + TSS region transcription start site region 77819
Tssr77820 8 70756453 to 70756473 20 + TSS region transcription start site region 77820
Tssr77821 8 70758087 to 70758098 11 + TSS region transcription start site region 77821
Tssr77822 8 70758108 to 70758134 26 + TSS region transcription start site region 77822
Tssr77823 8 70758183 to 70758200 17 + TSS region transcription start site region 77823
Tssr2601 8 70758256 to 70758267 11 + TSS region transcription start site region 2601
Mpv17l2 8 70758649 to 70760921 2272 - protein coding gene MPV17 mitochondrial membrane protein-like 2
Cpgi20496 8 70760267 to 70761438 1171 CpG island CpG island 20496
Tssr81657 8 70760499 to 70760511 12 - TSS region transcription start site region 81657
Tssr81658 8 70760845 to 70760854 9 - TSS region transcription start site region 81658
Tssr81659 8 70760889 to 70760953 64 - TSS region transcription start site region 81659
Tssr81660 8 70760955 to 70760968 13 - TSS region transcription start site region 81660
Ifi30 8 70762774 to 70766663 3889 - protein coding gene interferon gamma inducible protein 30
Tssr77824 8 70762934 to 70762979 45 + TSS region transcription start site region 77824
Tssr81661 8 70762959 to 70762976 17 - TSS region transcription start site region 81661
Tssr81662 8 70763001 to 70763026 25 - TSS region transcription start site region 81662
Tssr77825 8 70763718 to 70763739 21 + TSS region transcription start site region 77825
Tssr81663 8 70763762 to 70763825 63 - TSS region transcription start site region 81663
Tssr81664 8 70764125 to 70764136 11 - TSS region transcription start site region 81664
Tssr81665 8 70764151 to 70764184 33 - TSS region transcription start site region 81665
Tssr81666 8 70764602 to 70764616 14 - TSS region transcription start site region 81666
Tssr81667 8 70764629 to 70764644 15 - TSS region transcription start site region 81667
Tssr81668 8 70764758 to 70764782 24 - TSS region transcription start site region 81668
Tssr81669 8 70764979 to 70764995 16 - TSS region transcription start site region 81669
Tssr81670 8 70765004 to 70765021 17 - TSS region transcription start site region 81670
Tssr81671 8 70765058 to 70765083 25 - TSS region transcription start site region 81671
Cpgi20497 8 70765829 to 70766435 606 CpG island CpG island 20497
Tssr77826 8 70766059 to 70766073 14 + TSS region transcription start site region 77826
6330537M06Rik 8 70766579 to 70768220 1641 + unclassified gene RIKEN cDNA 6330537M06 gene
Tssr81672 8 70766654 to 70766671 17 - TSS region transcription start site region 81672
Pik3r2 8 70768178 to 70776715 8537 - protein coding gene phosphoinositide-3-kinase regulatory subunit 2
Cpgi20498 8 70769404 to 70769909 505 CpG island CpG island 20498
Gm3598 8 70773763 to 70774423 660 protein coding gene predicted gene 3598
Cpgi20499 8 70774639 to 70774808 169 CpG island CpG island 20499
Cpgi20500 8 70775873 to 70777723 1850 CpG island CpG island 20500
Tssr81673 8 70776634 to 70776640 6 - TSS region transcription start site region 81673
Tssr81674 8 70776650 to 70776716 66 - TSS region transcription start site region 81674
Tssr81675 8 70776720 to 70776731 11 - TSS region transcription start site region 81675
Tssr77827 8 70776762 to 70776773 11 + TSS region transcription start site region 77827
Tssr77828 8 70776778 to 70776829 51 + TSS region transcription start site region 77828
Tssr77829 8 70776847 to 70776897 50 + TSS region transcription start site region 77829
2010320M18Rik 8 70776862 to 70777606 744 + lincRNA gene RIKEN cDNA 2010320M18 gene
Tssr77830 8 70777332 to 70777364 32 + TSS region transcription start site region 77830
Mast3 8 70778117 to 70805054 26937 - protein coding gene microtubule associated serine/threonine kinase 3
Cpgi20501 8 70787715 to 70788488 773 CpG island CpG island 20501
Cpgi20502 8 70791960 to 70793249 1289 CpG island CpG island 20502
Tssr81676 8 70792392 to 70792451 59 - TSS region transcription start site region 81676
Cpgi20503 8 70796334 to 70798174 1840 CpG island CpG island 20503
Tssr81677 8 70796992 to 70797019 27 - TSS region transcription start site region 81677
Mir7240 8 70798135 to 70798192 57 + miRNA gene microRNA 7240
Cpgi20504 8 70803880 to 70805250 1370 CpG island CpG island 20504
Tssr81678 8 70804979 to 70804999 20 - TSS region transcription start site region 81678
Tssr81679 8 70805001 to 70805010 9 - TSS region transcription start site region 81679
Tssr77831 8 70808378 to 70808400 22 + TSS region transcription start site region 77831
Tssr77832 8 70808431 to 70808474 43 + TSS region transcription start site region 77832
Il12rb1 8 70808449 to 70821424 12975 + protein coding gene interleukin 12 receptor, beta 1
Cpgi20505 8 70816674 to 70817340 666 CpG island CpG island 20505
Cpgi20506 8 70820485 to 70820761 276 CpG island CpG island 20506
Cpgi20507 8 70821446 to 70821977 531 CpG island CpG island 20507
Arrdc2 8 70835129 to 70839720 4591 - protein coding gene arrestin domain containing 2
Cpgi20508 8 70838668 to 70840138 1470 CpG island CpG island 20508
Tssr81680 8 70839526 to 70839542 16 - TSS region transcription start site region 81680
Tssr81681 8 70839651 to 70839666 15 - TSS region transcription start site region 81681
Tssr77833 8 70841272 to 70841302 30 + TSS region transcription start site region 77833
Kcnn1 8 70842049 to 70863258 21209 - protein coding gene potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1
Cpgi20509 8 70842510 to 70842768 258 CpG island CpG island 20509
Cpgi20510 8 70856494 to 70857088 594 CpG island CpG island 20510
Cpgi20511 8 70862670 to 70864561 1891 CpG island CpG island 20511
A230052G05Rik 8 70863127 to 70865428 2301 + unclassified gene RIKEN cDNA A230052G05 gene
Tssr81682 8 70863749 to 70863765 16 - TSS region transcription start site region 81682