Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:45883535-46443569

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85 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi20305 8 45885340 to 45885653 313 CpG island CpG island 20305
Tssr77172 8 45885364 to 45885387 23 + TSS region transcription start site region 77172
Pdlim3 8 45885461 to 45919548 34087 + protein coding gene PDZ and LIM domain 3
Tssr77173 8 45885479 to 45885494 15 + TSS region transcription start site region 77173
Tssr77174 8 45885529 to 45885540 11 + TSS region transcription start site region 77174
D8Mit175 8 45885965 to 45886092 127 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 175
Cpgi20306 8 45918836 to 45919047 211 CpG island CpG island 20306
Gm45512 8 45920872 to 45922424 1552 + unclassified gene predicted gene 45512
Tssr77175 8 45934610 to 45934661 51 + TSS region transcription start site region 77175
Ccdc110 8 45934619 to 45944145 9526 + protein coding gene coiled-coil domain containing 110
Cpgi20307 8 45934632 to 45935090 458 CpG island CpG island 20307
Gm15878 8 45949612 to 45949917 305 + pseudogene predicted gene 15878
1700029J07Rik 8 45953606 to 45975252 21646 - protein coding gene RIKEN cDNA 1700029J07 gene
Cpgi20308 8 45975043 to 45975789 746 CpG island CpG island 20308
Tssr81185 8 45975224 to 45975281 57 - TSS region transcription start site region 81185
Tssr77176 8 45975514 to 45975558 44 + TSS region transcription start site region 77176
Ufsp2 8 45975528 to 45996958 21430 + protein coding gene UFM1-specific peptidase 2
Tssr77177 8 45992652 to 45992653 1 + TSS region transcription start site region 77177
Ankrd37 8 45996902 to 46000823 3921 - protein coding gene ankyrin repeat domain 37
Tssr77178 8 45999282 to 45999296 14 + TSS region transcription start site region 77178
Tssr77179 8 45999297 to 45999313 16 + TSS region transcription start site region 77179
Tssr77180 8 45999317 to 45999324 7 + TSS region transcription start site region 77180
Cpgi20309 8 45999684 to 46000566 882 CpG island CpG island 20309
Tssr81186 8 45999709 to 45999713 4 - TSS region transcription start site region 81186
Tssr81187 8 45999860 to 45999873 13 - TSS region transcription start site region 81187
Tssr81188 8 45999896 to 45999904 8 - TSS region transcription start site region 81188
D8Dcr14 8 46001614 to 46001714 100 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 14
Tssr77181 8 46010596 to 46010635 39 + TSS region transcription start site region 77181
Lrp2bp 8 46010598 to 46029478 18880 + protein coding gene Lrp2 binding protein
Snx25 8 46033261 to 46152159 118898 - protein coding gene sorting nexin 25
Tssr81189 8 46097784 to 46097788 4 - TSS region transcription start site region 81189
Gm23030 8 46107259 to 46107531 272 + unclassified non-coding RNA gene predicted gene, 23030
Cpgi20310 8 46151160 to 46152995 1835 CpG island CpG island 20310
Tssr77182 8 46151749 to 46151781 32 + TSS region transcription start site region 77182
Cfap97 8 46151777 to 46195590 43813 + protein coding gene cilia and flagella associated protein 97
Tssr77183 8 46151856 to 46151865 9 + TSS region transcription start site region 77183
Tssr81190 8 46152412 to 46152477 65 - TSS region transcription start site region 81190
Gm15634 8 46152610 to 46156100 3490 + sense intronic lncRNA gene predicted gene 15634
Tssr77184 8 46152634 to 46152648 14 + TSS region transcription start site region 77184
Gm45693 8 46162090 to 46163246 1156 + unclassified gene predicted gene 45693
Tssr77185 8 46162255 to 46162262 7 + TSS region transcription start site region 77185
Tssr77186 8 46162265 to 46162274 9 + TSS region transcription start site region 77186
Tssr77187 8 46162277 to 46162286 9 + TSS region transcription start site region 77187
Cpgi20311 8 46163224 to 46164168 944 CpG island CpG island 20311
Tssr81191 8 46163535 to 46163569 34 - TSS region transcription start site region 81191
Tssr77188 8 46163675 to 46163729 54 + TSS region transcription start site region 77188
Tssr77189 8 46163733 to 46163750 17 + TSS region transcription start site region 77189
Tssr77190 8 46163765 to 46163778 13 + TSS region transcription start site region 77190
Tssr77191 8 46163784 to 46163800 16 + TSS region transcription start site region 77191
Tssr77192 8 46163814 to 46163842 28 + TSS region transcription start site region 77192
Tssr77193 8 46194193 to 46194205 12 + TSS region transcription start site region 77193
Slc25a4 8 46207339 to 46211009 3670 - protein coding gene solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4
Tssr77194 8 46207544 to 46207599 55 + TSS region transcription start site region 77194
Tssr81192 8 46207553 to 46207573 20 - TSS region transcription start site region 81192
Tssr81193 8 46207594 to 46207626 32 - TSS region transcription start site region 81193
Tssr81194 8 46208438 to 46208469 31 - TSS region transcription start site region 81194
Cpgi20312 8 46208442 to 46208618 176 CpG island CpG island 20312
Tssr81195 8 46208517 to 46208543 26 - TSS region transcription start site region 81195
Tssr81196 8 46209056 to 46209122 66 - TSS region transcription start site region 81196
Tssr81197 8 46209138 to 46209157 19 - TSS region transcription start site region 81197
Tssr81198 8 46209239 to 46209258 19 - TSS region transcription start site region 81198
Cpgi20313 8 46210268 to 46211498 1230 CpG island CpG island 20313
Tssr81199 8 46210393 to 46210404 11 - TSS region transcription start site region 81199
Tssr81200 8 46211020 to 46211036 16 - TSS region transcription start site region 81200
Actg-ps1 8 46229011 to 46230128 1117 + pseudogene actin, gamma, pseudogene 1
Gm23812 8 46229794 to 46229877 83 + miRNA gene predicted gene, 23812
Cpgi20314 8 46252332 to 46252527 195 CpG island CpG island 20314
Gm10313 8 46254677 to 46255678 1001 - pseudogene predicted pseudogene 10313
Gm24669 8 46272051 to 46272147 96 + snRNA gene predicted gene, 24669
Gm8575 8 46279672 to 46280192 520 + pseudogene predicted gene 8575
Gm30880 8 46281945 to 46284669 2724 - lncRNA gene predicted gene, 30880
Helt 8 46292043 to 46294671 2628 - protein coding gene helt bHLH transcription factor
Cpgi20315 8 46292098 to 46292742 644 CpG island CpG island 20315
Cpgi20316 8 46293936 to 46294901 965 CpG island CpG island 20316
Tssr81201 8 46294592 to 46294601 9 - TSS region transcription start site region 81201
Gm39168 8 46301637 to 46325729 24092 + lincRNA gene predicted gene, 39168
Tssr77195 8 46310739 to 46310743 4 + TSS region transcription start site region 77195
Gm45255 8 46313801 to 46314611 810 + unclassified gene predicted gene 45255
Gm30931 8 46363251 to 46367204 3953 + lincRNA gene predicted gene, 30931
Gm45253 8 46372106 to 46385888 13782 - lincRNA gene predicted gene 45253
Tssr77196 8 46419701 to 46419707 6 + TSS region transcription start site region 77196
Tssr81202 8 46426341 to 46426382 41 - TSS region transcription start site region 81202
Tssr81203 8 46430155 to 46430175 20 - TSS region transcription start site region 81203
Tssr77197 8 46432851 to 46432860 9 + TSS region transcription start site region 77197
Tssr77198 8 46433016 to 46433027 11 + TSS region transcription start site region 77198