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Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:45392788-45942906

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82 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tlr3 8 45395665 to 45411080 15415 - protein coding gene toll-like receptor 3
Tssr81177 8 45409895 to 45409900 5 - TSS region transcription start site region 81177
Tssr2558 8 45409926 to 45409935 9 - TSS region transcription start site region 2558
Tssr2559 8 45409938 to 45409950 12 - TSS region transcription start site region 2559
Gm45542 8 45410063 to 45410760 697 + antisense lncRNA gene predicted gene 45542
Tssr81178 8 45410330 to 45410359 29 - TSS region transcription start site region 81178
Tssr81179 8 45410364 to 45410387 23 - TSS region transcription start site region 81179
Tssr81180 8 45410525 to 45410606 81 - TSS region transcription start site region 81180
Tssr81181 8 45410985 to 45411003 18 - TSS region transcription start site region 81181
D8Mit192 8 45459031 to 45459149 118 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 192
Tssr77128 8 45507502 to 45507522 20 + TSS region transcription start site region 77128
Tssr77129 8 45507737 to 45507740 3 + TSS region transcription start site region 77129
Tssr77130 8 45507768 to 45507807 39 + TSS region transcription start site region 77130
Sorbs2 8 45507788 to 45827906 320118 + protein coding gene sorbin and SH3 domain containing 2
Tssr77131 8 45507820 to 45507825 5 + TSS region transcription start site region 77131
Tssr77132 8 45507894 to 45507905 11 + TSS region transcription start site region 77132
Gm30759 8 45526389 to 45551328 24939 - lncRNA gene predicted gene, 30759
Gm45458 8 45539594 to 45540115 521 - unclassified gene predicted gene 45458
Tssr81182 8 45555732 to 45555735 3 - TSS region transcription start site region 81182
Tssr81183 8 45555737 to 45555745 8 - TSS region transcription start site region 81183
Gm16351 8 45579788 to 45599944 20156 - antisense lncRNA gene predicted gene 16351
Tssr77133 8 45579942 to 45579947 5 + TSS region transcription start site region 77133
Gm23604 8 45581616 to 45581747 131 - snoRNA gene predicted gene, 23604
Tssr77134 8 45627688 to 45627699 11 + TSS region transcription start site region 77134
Tssr77135 8 45627709 to 45627754 45 + TSS region transcription start site region 77135
Tssr77136 8 45627801 to 45627844 43 + TSS region transcription start site region 77136
Cpgi20303 8 45627824 to 45628160 336 CpG island CpG island 20303
Tssr77137 8 45627917 to 45627933 16 + TSS region transcription start site region 77137
Tssr77138 8 45627946 to 45627975 29 + TSS region transcription start site region 77138
Tssr77139 8 45627976 to 45628001 25 + TSS region transcription start site region 77139
Tssr77140 8 45628058 to 45628071 13 + TSS region transcription start site region 77140
Tssr77141 8 45628080 to 45628093 13 + TSS region transcription start site region 77141
Tssr77142 8 45628112 to 45628129 17 + TSS region transcription start site region 77142
Tssr77143 8 45628155 to 45628170 15 + TSS region transcription start site region 77143
Tssr77144 8 45628176 to 45628219 43 + TSS region transcription start site region 77144
Tssr81184 8 45630642 to 45630658 16 - TSS region transcription start site region 81184
Gm30635 8 45649946 to 45665137 15191 - lncRNA gene predicted gene, 30635
Tssr77145 8 45658273 to 45658298 25 + TSS region transcription start site region 77145
Tssr77146 8 45658299 to 45658308 9 + TSS region transcription start site region 77146
Tssr77147 8 45658309 to 45658323 14 + TSS region transcription start site region 77147
Tssr77148 8 45658324 to 45658338 14 + TSS region transcription start site region 77148
D8Mit297 8 45658458 to 45658559 101 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 297
Tssr77149 8 45658666 to 45658728 62 + TSS region transcription start site region 77149
Tssr77150 8 45658731 to 45658798 67 + TSS region transcription start site region 77150
Tssr77151 8 45658815 to 45658824 9 + TSS region transcription start site region 77151
Tssr77152 8 45658872 to 45658898 26 + TSS region transcription start site region 77152
Tssr77153 8 45658903 to 45658914 11 + TSS region transcription start site region 77153
D8Mit176 8 45666696 to 45666833 137 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 176
Tssr77154 8 45689982 to 45690000 18 + TSS region transcription start site region 77154
Tssr77155 8 45690101 to 45690112 11 + TSS region transcription start site region 77155
Tssr77156 8 45690121 to 45690144 23 + TSS region transcription start site region 77156
Tssr77157 8 45695379 to 45695394 15 + TSS region transcription start site region 77157
Tssr77158 8 45695469 to 45695483 14 + TSS region transcription start site region 77158
Tssr77159 8 45696414 to 45696418 4 + TSS region transcription start site region 77159
Sorbs2os 8 45723325 to 45819297 95972 - antisense lncRNA gene sorbin and SH3 domain containing 2, opposite strand
Tssr77160 8 45746617 to 45746628 11 + TSS region transcription start site region 77160
Tssr77161 8 45746670 to 45746685 15 + TSS region transcription start site region 77161
Tssr77162 8 45748954 to 45748959 5 + TSS region transcription start site region 77162
Tssr2560 8 45749002 to 45749010 8 + TSS region transcription start site region 2560
Tssr77163 8 45749285 to 45749299 14 + TSS region transcription start site region 77163
Tssr77164 8 45763873 to 45763933 60 + TSS region transcription start site region 77164
Tssr77165 8 45763938 to 45763951 13 + TSS region transcription start site region 77165
Tssr77166 8 45763957 to 45763970 13 + TSS region transcription start site region 77166
Gm45457 8 45779228 to 45782316 3088 + unclassified gene predicted gene 45457
Tssr77167 8 45784753 to 45784757 4 + TSS region transcription start site region 77167
Tssr77168 8 45791510 to 45791513 3 + TSS region transcription start site region 77168
Cpgi20304 8 45795725 to 45796054 329 CpG island CpG island 20304
Tssr77169 8 45803700 to 45803703 3 + TSS region transcription start site region 77169
Tssr77170 8 45827260 to 45827283 23 + TSS region transcription start site region 77170
Tssr77171 8 45827342 to 45827347 5 + TSS region transcription start site region 77171
Gm25309 8 45864478 to 45864603 125 - snRNA gene predicted gene, 25309
Cpgi20305 8 45885340 to 45885653 313 CpG island CpG island 20305
Tssr77172 8 45885364 to 45885387 23 + TSS region transcription start site region 77172
Pdlim3 8 45885461 to 45919548 34087 + protein coding gene PDZ and LIM domain 3
Tssr77173 8 45885479 to 45885494 15 + TSS region transcription start site region 77173
Tssr77174 8 45885529 to 45885540 11 + TSS region transcription start site region 77174
D8Mit175 8 45885965 to 45886092 127 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 175
Cpgi20306 8 45918836 to 45919047 211 CpG island CpG island 20306
Gm45512 8 45920872 to 45922424 1552 + unclassified gene predicted gene 45512
Tssr77175 8 45934610 to 45934661 51 + TSS region transcription start site region 77175
Ccdc110 8 45934619 to 45944145 9526 + protein coding gene coiled-coil domain containing 110
Cpgi20307 8 45934632 to 45935090 458 CpG island CpG island 20307