Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:122443679-122834053

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103 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cpgi21219 8 122442680 to 122444025 1345 CpG island CpG island 21219
9330133O14Rik 8 122443656 to 122446476 2820 + lncRNA gene RIKEN cDNA 9330133O14 gene
Tssr79869 8 122443662 to 122443721 59 + TSS region transcription start site region 79869
Tssr79870 8 122444056 to 122444059 3 + TSS region transcription start site region 79870
Gm20735 8 122445268 to 122451322 6054 - lincRNA gene predicted gene, 20735
Snai3 8 122454208 to 122460733 6525 - protein coding gene snail family zinc finger 3
Cpgi21220 8 122460258 to 122461395 1137 CpG island CpG island 21220
Tssr83272 8 122460666 to 122460695 29 - TSS region transcription start site region 83272
Rnf166 8 122466147 to 122476064 9917 - protein coding gene ring finger protein 166
Tssr79871 8 122470196 to 122470212 16 + TSS region transcription start site region 79871
Tssr79872 8 122470227 to 122470232 5 + TSS region transcription start site region 79872
Gm24366 8 122471627 to 122471712 85 - miRNA gene predicted gene, 24366
Tssr83273 8 122474776 to 122474781 5 - TSS region transcription start site region 83273
Cpgi21221 8 122474984 to 122476687 1703 CpG island CpG island 21221
Tssr83274 8 122475709 to 122475729 20 - TSS region transcription start site region 83274
Tssr83275 8 122476003 to 122476026 23 - TSS region transcription start site region 83275
Tssr83276 8 122476036 to 122476088 52 - TSS region transcription start site region 83276
Ctu2 8 122476094 to 122483094 7000 + protein coding gene cytosolic thiouridylase subunit 2
Tssr83277 8 122476096 to 122476115 19 - TSS region transcription start site region 83277
Tssr79873 8 122476152 to 122476194 42 + TSS region transcription start site region 79873
Tssr79874 8 122476196 to 122476223 27 + TSS region transcription start site region 79874
Piezo1 8 122481698 to 122551329 69631 - protein coding gene piezo-type mechanosensitive ion channel component 1
Cpgi21222 8 122488117 to 122488511 394 CpG island CpG island 21222
Tssr83278 8 122491935 to 122491941 6 - TSS region transcription start site region 83278
Gm26497 8 122520568 to 122520674 106 - snRNA gene predicted gene, 26497
Tssr79875 8 122523574 to 122523627 53 + TSS region transcription start site region 79875
Tssr79876 8 122523649 to 122523658 9 + TSS region transcription start site region 79876
Tssr79877 8 122546482 to 122546501 19 + TSS region transcription start site region 79877
Tssr79878 8 122549338 to 122549357 19 + TSS region transcription start site region 79878
Cpgi21223 8 122550094 to 122551912 1818 CpG island CpG island 21223
Tssr79879 8 122550421 to 122550432 11 + TSS region transcription start site region 79879
Tssr79880 8 122550651 to 122550698 47 + TSS region transcription start site region 79880
Tssr83279 8 122551316 to 122551333 17 - TSS region transcription start site region 83279
Gm34847 8 122556348 to 122559608 3260 + lncRNA gene predicted gene, 34847
Tssr83280 8 122556734 to 122556755 21 - TSS region transcription start site region 83280
Tssr79881 8 122557846 to 122557895 49 + TSS region transcription start site region 79881
Tssr79882 8 122564573 to 122564613 40 + TSS region transcription start site region 79882
Tssr79883 8 122564783 to 122564800 17 + TSS region transcription start site region 79883
Tssr79884 8 122564918 to 122564956 38 + TSS region transcription start site region 79884
Cpgi21224 8 122567233 to 122568486 1253 CpG island CpG island 21224
Tssr83281 8 122567706 to 122567715 9 - TSS region transcription start site region 83281
Tssr83282 8 122567771 to 122567793 22 - TSS region transcription start site region 83282
Tssr2717 8 122567976 to 122567983 7 + TSS region transcription start site region 2717
Tssr79885 8 122568001 to 122568020 19 + TSS region transcription start site region 79885
Cdt1 8 122568015 to 122573130 5115 + protein coding gene chromatin licensing and DNA replication factor 1
Tssr79886 8 122568021 to 122568060 39 + TSS region transcription start site region 79886
Tssr83283 8 122568348 to 122568367 19 - TSS region transcription start site region 83283
Tssr79887 8 122569173 to 122569195 22 + TSS region transcription start site region 79887
Tssr79888 8 122570230 to 122570250 20 + TSS region transcription start site region 79888
Tssr79889 8 122574635 to 122574638 3 + TSS region transcription start site region 79889
Aprt 8 122574637 to 122576907 2270 - protein coding gene adenine phosphoribosyl transferase
Tssr79890 8 122574805 to 122574810 5 + TSS region transcription start site region 79890
Tssr83284 8 122575017 to 122575033 16 - TSS region transcription start site region 83284
Tssr83285 8 122575431 to 122575444 13 - TSS region transcription start site region 83285
Tssr83286 8 122575448 to 122575478 30 - TSS region transcription start site region 83286
Cpgi21225 8 122576232 to 122577243 1011 CpG island CpG island 21225
Tssr83287 8 122576613 to 122576624 11 - TSS region transcription start site region 83287
Tssr83288 8 122576830 to 122576892 62 - TSS region transcription start site region 83288
Tssr83289 8 122576899 to 122576927 28 - TSS region transcription start site region 83289
Galns 8 122578242 to 122611463 33221 - protein coding gene galactosamine (N-acetyl)-6-sulfate sulfatase
Gm34962 8 122586818 to 122591272 4454 + pseudogene predicted gene, 34962
Tssr79891 8 122589694 to 122589696 2 + TSS region transcription start site region 79891
Cpgi21226 8 122594112 to 122594408 296 CpG island CpG island 21226
Tssr83290 8 122596092 to 122596111 19 - TSS region transcription start site region 83290
Tssr83291 8 122596176 to 122596192 16 - TSS region transcription start site region 83291
Gm45857 8 122596899 to 122597254 355 - pseudogene predicted gene 45857
Cpgi21227 8 122610968 to 122612161 1193 CpG island CpG island 21227
Tssr83292 8 122611358 to 122611411 53 - TSS region transcription start site region 83292
Tssr83293 8 122611419 to 122611438 19 - TSS region transcription start site region 83293
Tssr79892 8 122611618 to 122611663 45 + TSS region transcription start site region 79892
Trappc2l 8 122611626 to 122615591 3965 + protein coding gene trafficking protein particle complex 2-like
Tssr79893 8 122613901 to 122613920 19 + TSS region transcription start site region 79893
Pabpn1l 8 122619471 to 122622735 3264 - protein coding gene poly(A)binding protein nuclear 1-like
Mir6396 8 122622265 to 122622375 110 - miRNA gene microRNA 6396
Cbfa2t3 8 122625141 to 122699109 73968 - protein coding gene CBFA2/RUNX1 translocation partner 3
Tssr83294 8 122629938 to 122629942 4 - TSS region transcription start site region 83294
Cpgi21228 8 122638679 to 122639053 374 CpG island CpG island 21228
Cpgi21229 8 122677150 to 122679191 2041 CpG island CpG island 21229
Tssr83295 8 122678130 to 122678182 52 - TSS region transcription start site region 83295
Tssr83296 8 122678522 to 122678572 50 - TSS region transcription start site region 83296
Tssr83297 8 122678653 to 122678669 16 - TSS region transcription start site region 83297
Gm15899 8 122683602 to 122683839 237 - pseudogene predicted gene 15899
Tssr2718 8 122694219 to 122694221 2 + TSS region transcription start site region 2718
Gm10612 8 122697860 to 122700160 2300 + antisense lncRNA gene predicted gene 10612
Tssr83298 8 122699066 to 122699119 53 - TSS region transcription start site region 83298
Tssr83299 8 122699122 to 122699137 15 - TSS region transcription start site region 83299
Tssr83300 8 122699459 to 122699465 6 - TSS region transcription start site region 83300
Cpgi21230 8 122709410 to 122709706 296 CpG island CpG island 21230
Tssr79894 8 122709430 to 122709436 6 + TSS region transcription start site region 79894
Tssr79895 8 122709503 to 122709528 25 + TSS region transcription start site region 79895
C230057M02Rik 8 122724948 to 122752325 27377 - lincRNA gene RIKEN cDNA C230057M02 gene
Cpgi21231 8 122751788 to 122752636 848 CpG island CpG island 21231
Tssr83301 8 122752183 to 122752207 24 - TSS region transcription start site region 83301
Tssr83302 8 122752339 to 122752378 39 - TSS region transcription start site region 83302
A530010L16Rik 8 122760034 to 122762866 2832 - lincRNA gene RIKEN cDNA A530010L16 gene
Cpgi21232 8 122769250 to 122769526 276 CpG island CpG island 21232
Gm39271 8 122774035 to 122775423 1388 - bidirectional promoter lncRNA gene predicted gene, 39271
Cpgi21233 8 122775327 to 122776090 763 CpG island CpG island 21233
Tssr2719 8 122775483 to 122775494 11 + TSS region transcription start site region 2719
Acsf3 8 122775493 to 122817882 42389 + protein coding gene acyl-CoA synthetase family member 3
Tssr79896 8 122775497 to 122775514 17 + TSS region transcription start site region 79896
Gm35466 8 122823424 to 122838033 14609 + lncRNA gene predicted gene, 35466
Gm45743 8 122826086 to 122828880 2794 + unclassified gene predicted gene 45743