Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:120744352-121424368

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Irf8 8 120736358 to 120756694 20336 + protein coding gene interferon regulatory factor 8
Tssr79793 8 120744804 to 120744810 6 + TSS region transcription start site region 79793
Tssr79794 8 120756305 to 120756346 41 + TSS region transcription start site region 79794
Gm39266 8 120767475 to 120770229 2754 - lncRNA gene predicted gene, 39266
D8Mit55 8 120785201 to 120785344 143 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 55
Gm33199 8 120786929 to 120795374 8445 + lncRNA gene predicted gene, 33199
Tssr79795 8 120832952 to 120832954 2 + TSS region transcription start site region 79795
Cpgi21162 8 120847871 to 120848052 181 CpG island CpG island 21162
Gm39267 8 120851385 to 120867621 16236 - lncRNA gene predicted gene, 39267
Gm33368 8 120868990 to 120874597 5607 - lncRNA gene predicted gene, 33368
Gm26878 8 120879399 to 120881217 1818 + lincRNA gene predicted gene, 26878
Cpgi21163 8 120883341 to 120883674 333 CpG island CpG island 21163
Cpgi21164 8 120887422 to 120887685 263 CpG island CpG island 21164
Cpgi21165 8 120900481 to 120900867 386 CpG island CpG island 21165
Gm33471 8 120917008 to 120919697 2689 + lncRNA gene predicted gene, 33471
Cpgi21166 8 120971997 to 120972561 564 CpG island CpG island 21166
Gm28324 8 121002927 to 121003190 263 + lincRNA gene predicted gene 28324
Gm33579 8 121016513 to 121023617 7104 - lncRNA gene predicted gene, 33579
Cpgi21167 8 121016632 to 121016989 357 CpG island CpG island 21167
Gm46071 8 121035751 to 121037957 2206 - lncRNA gene predicted gene, 46071
Cpgi21168 8 121043372 to 121043729 357 CpG island CpG island 21168
Fendrr 8 121054882 to 121083110 28228 - lncRNA gene Foxf1 adjacent non-coding developmental regulatory RNA
Cpgi21169 8 121063716 to 121063887 171 CpG island CpG island 21169
Tssr83214 8 121070300 to 121070323 23 - TSS region transcription start site region 83214
Cpgi21170 8 121071529 to 121071694 165 CpG island CpG island 21170
Cpgi21171 8 121073480 to 121074034 554 CpG island CpG island 21171
Tssr79796 8 121079479 to 121079485 6 + TSS region transcription start site region 79796
Cpgi21172 8 121080209 to 121081235 1026 CpG island CpG island 21172
Cpgi21173 8 121082307 to 121085419 3112 CpG island CpG island 21173
Tssr83215 8 121083023 to 121083050 27 - TSS region transcription start site region 83215
Tssr83216 8 121083052 to 121083083 31 - TSS region transcription start site region 83216
Tssr83217 8 121083085 to 121083153 68 - TSS region transcription start site region 83217
Tssr83218 8 121083166 to 121083191 25 - TSS region transcription start site region 83218
Tssr79797 8 121083330 to 121083340 10 + TSS region transcription start site region 79797
Tssr79798 8 121083838 to 121083859 21 + TSS region transcription start site region 79798
Tssr83219 8 121083916 to 121083934 18 - TSS region transcription start site region 83219
Tssr83220 8 121083949 to 121083972 23 - TSS region transcription start site region 83220
Tssr79799 8 121084334 to 121084341 7 + TSS region transcription start site region 79799
Tssr79800 8 121084352 to 121084368 16 + TSS region transcription start site region 79800
Foxf1 8 121084386 to 121088144 3758 + protein coding gene forkhead box F1
Gm27530 8 121084609 to 121084706 97 - miRNA gene predicted gene, 27530
Cpgi21174 8 121088722 to 121090030 1308 CpG island CpG island 21174
Cpgi21175 8 121092853 to 121093088 235 CpG island CpG island 21175
Mthfsd 8 121097555 to 121108415 10860 - protein coding gene methenyltetrahydrofolate synthetase domain containing
Cpgi21176 8 121107724 to 121108768 1044 CpG island CpG island 21176
Tssr83221 8 121108301 to 121108359 58 - TSS region transcription start site region 83221
Tssr83222 8 121108361 to 121108406 45 - TSS region transcription start site region 83222
Cpgi21177 8 121113307 to 121113690 383 CpG island CpG island 21177
Cpgi21178 8 121114803 to 121115501 698 CpG island CpG island 21178
Cpgi21179 8 121116031 to 121118330 2299 CpG island CpG island 21179
Tssr79801 8 121116163 to 121116177 14 + TSS region transcription start site region 79801
Foxc2 8 121116171 to 121118895 2724 + protein coding gene forkhead box C2
Tssr79802 8 121116190 to 121116201 11 + TSS region transcription start site region 79802
Tssr79803 8 121116866 to 121116872 6 + TSS region transcription start site region 79803
Tssr79804 8 121118325 to 121118332 7 + TSS region transcription start site region 79804
Cpgi21180 8 121125286 to 121125901 615 CpG island CpG island 21180
Tssr83223 8 121125635 to 121125640 5 - TSS region transcription start site region 83223
Cpgi21181 8 121127732 to 121129407 1675 CpG island CpG island 21181
Tssr79805 8 121127827 to 121127848 21 + TSS region transcription start site region 79805
Foxl1 8 121127940 to 121130644 2704 + protein coding gene forkhead box L1
Gm37609 8 121140943 to 121141620 677 + unclassified gene predicted gene, 37609
Gm33633 8 121166916 to 121168363 1447 - lncRNA gene predicted gene, 33633
Cpgi21182 8 121170681 to 121170875 194 CpG island CpG island 21182
Gm42046 8 121172324 to 121183403 11079 + lncRNA gene predicted gene, 42046
5033426O07Rik 8 121198714 to 121203496 4782 - lincRNA gene RIKEN cDNA 5033426O07 gene
Cpgi21183 8 121213174 to 121213564 390 CpG island CpG island 21183
Gm33739 8 121213807 to 121222717 8910 + lncRNA gene predicted gene, 33739
Cpgi21184 8 121220574 to 121220785 211 CpG island CpG island 21184
D8Mit169 8 121232856 to 121232998 142 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 169
Gm26815 8 121256747 to 121356836 100089 - lincRNA gene predicted gene, 26815
Gm33823 8 121261747 to 121264665 2918 - lncRNA gene predicted gene, 33823
Cpgi21185 8 121272549 to 121273335 786 CpG island CpG island 21185
Cpgi21186 8 121290701 to 121290859 158 CpG island CpG island 21186
Cpgi21187 8 121293916 to 121294534 618 CpG island CpG island 21187
Sluc38a 8 121307238 to 121307371 133 QTL susceptibility to lung cancer 38a
D8Mit36 8 121307238 to 121307371 133 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 36
Sluc38 8 121307238 to 121307371 133 QTL susceptibility to lung cancer 38
Cpgi21188 8 121311004 to 121311209 205 CpG island CpG island 21188
Tssr79806 8 121421208 to 121421218 10 + TSS region transcription start site region 79806
Gm26747 8 121421238 to 121428043 6805 + lincRNA gene predicted gene, 26747