Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:118944472-119744483

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132 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cdh13 8 118283733 to 119324921 1041188 + protein coding gene cadherin 13
Tssr79665 8 118970389 to 118970393 4 + TSS region transcription start site region 79665
D8Mit168 8 118985838 to 118985973 135 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 168
Gm31893 8 119052306 to 119058195 5889 - lncRNA gene predicted gene, 31893
Tssr79666 8 119062044 to 119062058 14 + TSS region transcription start site region 79666
Tssr79667 8 119086561 to 119086562 1 + TSS region transcription start site region 79667
Tssr79668 8 119095002 to 119095032 30 + TSS region transcription start site region 79668
Tssr2700 8 119213901 to 119213907 6 + TSS region transcription start site region 2700
Tssr79669 8 119277368 to 119277392 24 + TSS region transcription start site region 79669
Tssr79670 8 119277396 to 119277428 32 + TSS region transcription start site region 79670
Tssr79671 8 119277429 to 119277440 11 + TSS region transcription start site region 79671
D8Mit187 8 119319605 to 119319885 280 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 187
Cpgi21112 8 119344133 to 119344969 836 CpG island CpG island 21112
Tssr79672 8 119344472 to 119344483 11 + TSS region transcription start site region 79672
Tssr79673 8 119344490 to 119344536 46 + TSS region transcription start site region 79673
Hsbp1 8 119344538 to 119348929 4391 + protein coding gene heat shock factor binding protein 1
Tssr79674 8 119344540 to 119344551 11 + TSS region transcription start site region 79674
Tssr79675 8 119344717 to 119344731 14 + TSS region transcription start site region 79675
Tssr79676 8 119344749 to 119344761 12 + TSS region transcription start site region 79676
Tssr79677 8 119344932 to 119344973 41 + TSS region transcription start site region 79677
Tssr79678 8 119345239 to 119345260 21 + TSS region transcription start site region 79678
Tssr79679 8 119345425 to 119345435 10 + TSS region transcription start site region 79679
Tssr79680 8 119345621 to 119345632 11 + TSS region transcription start site region 79680
Tssr79681 8 119348124 to 119348189 65 + TSS region transcription start site region 79681
D8Mit274 8 119359466 to 119359708 242 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 274
Gm45723 8 119384389 to 119386392 2003 + lincRNA gene predicted gene 45723
Cpgi21113 8 119394508 to 119395819 1311 CpG island CpG island 21113
Tssr79682 8 119394866 to 119394954 88 + TSS region transcription start site region 79682
Mlycd 8 119394878 to 119411102 16224 + protein coding gene malonyl-CoA decarboxylase
Tssr79683 8 119404582 to 119404595 13 + TSS region transcription start site region 79683
Gm46053 8 119406544 to 119407549 1005 - lncRNA gene predicted gene, 46053
D8Mit188 8 119408978 to 119409127 149 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 188
Gm32006 8 119415104 to 119429070 13966 - lncRNA gene predicted gene, 32006
Tssr2701 8 119415987 to 119415990 3 + TSS region transcription start site region 2701
Tssr83116 8 119416918 to 119416928 10 - TSS region transcription start site region 83116
Tssr79684 8 119417378 to 119417394 16 + TSS region transcription start site region 79684
Tssr83117 8 119417982 to 119417990 8 - TSS region transcription start site region 83117
Tssr79685 8 119418952 to 119418957 5 + TSS region transcription start site region 79685
Tssr79686 8 119418983 to 119418987 4 + TSS region transcription start site region 79686
Tssr79687 8 119419013 to 119419018 5 + TSS region transcription start site region 79687
Tssr2702 8 119419027 to 119419032 5 + TSS region transcription start site region 2702
Tssr79688 8 119419041 to 119419052 11 + TSS region transcription start site region 79688
Tssr2703 8 119423988 to 119424003 15 + TSS region transcription start site region 2703
Tssr83118 8 119424330 to 119424343 13 - TSS region transcription start site region 83118
Tssr83119 8 119424344 to 119424362 18 - TSS region transcription start site region 83119
Tssr79689 8 119424461 to 119424481 20 + TSS region transcription start site region 79689
Tssr83120 8 119424969 to 119425002 33 - TSS region transcription start site region 83120
Tssr79690 8 119425903 to 119425931 28 + TSS region transcription start site region 79690
Tssr79691 8 119425936 to 119425958 22 + TSS region transcription start site region 79691
Tssr83121 8 119426580 to 119426593 13 - TSS region transcription start site region 83121
Tssr83122 8 119428928 to 119428937 9 - TSS region transcription start site region 83122
Tssr83123 8 119428989 to 119429023 34 - TSS region transcription start site region 83123
Osgin1 8 119434135 to 119446256 12121 + protein coding gene oxidative stress induced growth inhibitor 1
Tssr79692 8 119437092 to 119437133 41 + TSS region transcription start site region 79692
Tssr79693 8 119437139 to 119437154 15 + TSS region transcription start site region 79693
Tssr79694 8 119441397 to 119441418 21 + TSS region transcription start site region 79694
Tssr79695 8 119442478 to 119442512 34 + TSS region transcription start site region 79695
Cpgi21114 8 119446310 to 119448117 1807 CpG island CpG island 21114
Necab2 8 119446719 to 119472640 25921 + protein coding gene N-terminal EF-hand calcium binding protein 2
Tssr79696 8 119446745 to 119446766 21 + TSS region transcription start site region 79696
Tssr79697 8 119446841 to 119446852 11 + TSS region transcription start site region 79697
Tssr79698 8 119446922 to 119446947 25 + TSS region transcription start site region 79698
Tssr79699 8 119447038 to 119447135 97 + TSS region transcription start site region 79699
Tssr79700 8 119465276 to 119465305 29 + TSS region transcription start site region 79700
Tssr79701 8 119466432 to 119466450 18 + TSS region transcription start site region 79701
Slc38a8 8 119479602 to 119501698 22096 - protein coding gene solute carrier family 38, member 8
Tssr83124 8 119501698 to 119501726 28 - TSS region transcription start site region 83124
Tssr83125 8 119501761 to 119501766 5 - TSS region transcription start site region 83125
Mbtps1 8 119508156 to 119558735 50579 - protein coding gene membrane-bound transcription factor peptidase, site 1
Tssr83126 8 119545080 to 119545083 3 - TSS region transcription start site region 83126
Cpgi21115 8 119557974 to 119559328 1354 CpG island CpG island 21115
Tssr83127 8 119558412 to 119558462 50 - TSS region transcription start site region 83127
Tssr83128 8 119558468 to 119558488 20 - TSS region transcription start site region 83128
Tssr83129 8 119558681 to 119558692 11 - TSS region transcription start site region 83129
Tssr83130 8 119558699 to 119558711 12 - TSS region transcription start site region 83130
Tssr83131 8 119558718 to 119558766 48 - TSS region transcription start site region 83131
Tssr83132 8 119558794 to 119558807 13 - TSS region transcription start site region 83132
Tssr79702 8 119558973 to 119558979 6 + TSS region transcription start site region 79702
Hsdl1 8 119561989 to 119575183 13194 - protein coding gene hydroxysteroid dehydrogenase like 1
Tssr83133 8 119563723 to 119563727 4 - TSS region transcription start site region 83133
Tssr83134 8 119566517 to 119566525 8 - TSS region transcription start site region 83134
Tssr83135 8 119570024 to 119570035 11 - TSS region transcription start site region 83135
Tssr83136 8 119570079 to 119570091 12 - TSS region transcription start site region 83136
Tssr83137 8 119572080 to 119572091 11 - TSS region transcription start site region 83137
Cpgi21116 8 119574193 to 119575711 1518 CpG island CpG island 21116
Tssr83138 8 119574522 to 119574533 11 - TSS region transcription start site region 83138
Tssr83139 8 119574821 to 119574833 12 - TSS region transcription start site region 83139
Tssr83140 8 119574840 to 119574851 11 - TSS region transcription start site region 83140
Tssr83141 8 119574914 to 119574927 13 - TSS region transcription start site region 83141
Tssr83142 8 119574930 to 119574970 40 - TSS region transcription start site region 83142
Tssr83143 8 119574973 to 119574984 11 - TSS region transcription start site region 83143
Tssr83144 8 119575127 to 119575138 11 - TSS region transcription start site region 83144
Tssr83145 8 119575143 to 119575205 62 - TSS region transcription start site region 83145
Dnaaf1 8 119575235 to 119598454 23219 + protein coding gene dynein, axonemal assembly factor 1
Tssr79703 8 119575262 to 119575340 78 + TSS region transcription start site region 79703
Tssr79704 8 119575354 to 119575361 7 + TSS region transcription start site region 79704
Tssr83146 8 119585821 to 119585851 30 - TSS region transcription start site region 83146
Cpgi21117 8 119585998 to 119586293 295 CpG island CpG island 21117
Tssr83147 8 119586116 to 119586122 6 - TSS region transcription start site region 83147
Taf1c 8 119597974 to 119605240 7266 - protein coding gene TATA-box binding protein associated factor, RNA polymerase I, C
Rps13-ps4 8 119602170 to 119602625 455 - pseudogene ribosomal protein S13, pseudogene 4
Cpgi21118 8 119604679 to 119605586 907 CpG island CpG island 21118
Tssr83148 8 119605199 to 119605213 14 - TSS region transcription start site region 83148
Cpgi21119 8 119612462 to 119612896 434 CpG island CpG island 21119
Tssr79705 8 119612701 to 119612732 31 + TSS region transcription start site region 79705
Adad2 8 119612747 to 119616924 4177 + protein coding gene adenosine deaminase domain containing 2
Kcng4 8 119623854 to 119635680 11826 - protein coding gene potassium voltage-gated channel, subfamily G, member 4
Cpgi21120 8 119625705 to 119626340 635 CpG island CpG island 21120
Tssr83149 8 119625915 to 119625943 28 - TSS region transcription start site region 83149
Gm46055 8 119631151 to 119632876 1725 - lncRNA gene predicted gene, 46055
Cpgi21121 8 119632858 to 119633577 719 CpG island CpG island 21121
Tssr83150 8 119635467 to 119635478 11 - TSS region transcription start site region 83150
Tssr83151 8 119635491 to 119635505 14 - TSS region transcription start site region 83151
Tssr83152 8 119635511 to 119635536 25 - TSS region transcription start site region 83152
Tssr83153 8 119635553 to 119635575 22 - TSS region transcription start site region 83153
Gm46054 8 119635818 to 119646868 11050 + lncRNA gene predicted gene, 46054
Gm32352 8 119659475 to 119670881 11406 - antisense lncRNA gene predicted gene, 32352
Tssr83154 8 119661301 to 119661334 33 - TSS region transcription start site region 83154
Tssr79706 8 119666243 to 119666252 9 + TSS region transcription start site region 79706
Tssr79707 8 119666272 to 119666277 5 + TSS region transcription start site region 79707
Tssr2704 8 119666330 to 119666345 15 + TSS region transcription start site region 2704
Tssr79708 8 119666359 to 119666372 13 + TSS region transcription start site region 79708
Wfdc1 8 119666365 to 119688020 21655 + protein coding gene WAP four-disulfide core domain 1
Tssr79709 8 119666467 to 119666480 13 + TSS region transcription start site region 79709
Tssr79710 8 119666487 to 119666496 9 + TSS region transcription start site region 79710
Tssr79711 8 119666498 to 119666511 13 + TSS region transcription start site region 79711
Tssr83155 8 119693779 to 119693795 16 - TSS region transcription start site region 83155
Cpgi21122 8 119699888 to 119700168 280 CpG island CpG island 21122
Atp2c2 8 119700009 to 119757717 57708 + protein coding gene ATPase, Ca++ transporting, type 2C, member 2
Tssr79712 8 119700017 to 119700062 45 + TSS region transcription start site region 79712
5033405D04Rik 8 119714453 to 119715451 998 unclassified gene RIKEN cDNA 5033405D04 gene
Gm45747 8 119714454 to 119715452 998 + unclassified gene predicted gene 45747