Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:117669247-119039250

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74 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sdr42e1 8 117661399 to 117673689 12290 - protein coding gene short chain dehydrogenase/reductase family 42E, member 1
Tssr83101 8 117671260 to 117671271 11 - TSS region transcription start site region 83101
Tssr83102 8 117671501 to 117671523 22 - TSS region transcription start site region 83102
Tssr83103 8 117671526 to 117671555 29 - TSS region transcription start site region 83103
Cpgi21104 8 117673378 to 117673670 292 CpG island CpG island 21104
Tssr83104 8 117673632 to 117673655 23 - TSS region transcription start site region 83104
Tssr83105 8 117673663 to 117673674 11 - TSS region transcription start site region 83105
Tssr83106 8 117673682 to 117673701 19 - TSS region transcription start site region 83106
Gm31717 8 117675815 to 117677209 1394 - lincRNA gene predicted gene, 31717
Gm38416 8 117681622 to 117693198 11576 + lincRNA gene predicted gene, 38416
Tssr83107 8 117692255 to 117692278 23 - TSS region transcription start site region 83107
Tssr83108 8 117692281 to 117692298 17 - TSS region transcription start site region 83108
Tssr79641 8 117701007 to 117701054 47 + TSS region transcription start site region 79641
Tssr79642 8 117701064 to 117701084 20 + TSS region transcription start site region 79642
Tssr79643 8 117701820 to 117701850 30 + TSS region transcription start site region 79643
Hsd17b2 8 117701904 to 117759027 57123 + protein coding gene hydroxysteroid (17-beta) dehydrogenase 2
Tssr79644 8 117701937 to 117701956 19 + TSS region transcription start site region 79644
Cpgi21105 8 117701990 to 117702159 169 CpG island CpG island 21105
Tssr79645 8 117702056 to 117702061 5 + TSS region transcription start site region 79645
Tssr79646 8 117702189 to 117702200 11 + TSS region transcription start site region 79646
Gm45776 8 117712570 to 117714091 1521 + unclassified gene predicted gene 45776
Tssr83109 8 117714219 to 117714227 8 - TSS region transcription start site region 83109
Tssr79647 8 117739066 to 117739067 1 + TSS region transcription start site region 79647
Gm31774 8 117746331 to 117748260 1929 - antisense lncRNA gene predicted gene, 31774
Tssr83110 8 117748253 to 117748262 9 - TSS region transcription start site region 83110
Gm39261 8 117761601 to 117776462 14861 - lncRNA gene predicted gene, 39261
Mphosph6 8 117791642 to 117801935 10293 - protein coding gene M phase phosphoprotein 6
Tssr2698 8 117794756 to 117794761 5 + TSS region transcription start site region 2698
Cpgi21106 8 117801492 to 117802779 1287 CpG island CpG island 21106
Tssr83111 8 117801903 to 117801949 46 - TSS region transcription start site region 83111
Tssr83112 8 117801962 to 117801973 11 - TSS region transcription start site region 83112
Gm10617 8 117802062 to 117803234 1172 + pseudogene predicted gene 10617
Cpgi21107 8 117806634 to 117806799 165 CpG island CpG island 21107
D8Ertd503e 8 117902039 to 117902248 209 DNA segment DNA segment, Chr 8, ERATO Doi 503, expressed
Tssr79648 8 117920079 to 117920089 10 + TSS region transcription start site region 79648
Cpgi21108 8 117934511 to 117934720 209 CpG island CpG island 21108
Gm39262 8 117944793 to 117948430 3637 - lncRNA gene predicted gene, 39262
Gm25200 8 118120954 to 118121083 129 + snoRNA gene predicted gene, 25200
Cpgi21109 8 118283561 to 118284689 1128 CpG island CpG island 21109
Tssr79649 8 118283588 to 118283602 14 + TSS region transcription start site region 79649
Tssr79650 8 118283607 to 118283618 11 + TSS region transcription start site region 79650
Tssr79651 8 118283623 to 118283633 10 + TSS region transcription start site region 79651
Tssr79652 8 118283653 to 118283664 11 + TSS region transcription start site region 79652
Tssr79653 8 118283719 to 118283738 19 + TSS region transcription start site region 79653
Cdh13 8 118283733 to 119324921 1041188 + protein coding gene cadherin 13
Tssr79654 8 118283744 to 118283767 23 + TSS region transcription start site region 79654
Tssr79655 8 118283789 to 118283803 14 + TSS region transcription start site region 79655
Tssr83113 8 118309056 to 118309060 4 - TSS region transcription start site region 83113
Tssr79656 8 118309403 to 118309424 21 + TSS region transcription start site region 79656
D8Mit120 8 118341509 to 118341638 129 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 120
Tssr79657 8 118354247 to 118354250 3 + TSS region transcription start site region 79657
Gm45722 8 118381726 to 118382191 465 - pseudogene predicted gene 45722
Gm24035 8 118426493 to 118426599 106 - snRNA gene predicted gene, 24035
Tssr2699 8 118438119 to 118438131 12 + TSS region transcription start site region 2699
Tssr79658 8 118443636 to 118443638 2 + TSS region transcription start site region 79658
Tssr83114 8 118465744 to 118465751 7 - TSS region transcription start site region 83114
Tssr79659 8 118470653 to 118470680 27 + TSS region transcription start site region 79659
Tssr79660 8 118549704 to 118549705 1 + TSS region transcription start site region 79660
Tssr79661 8 118561437 to 118561440 3 + TSS region transcription start site region 79661
D8Mit361 8 118591011 to 118591117 106 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 361
Gm45721 8 118607127 to 118610499 3372 - antisense lncRNA gene predicted gene 45721
Gm45720 8 118610989 to 118615879 4890 - antisense lncRNA gene predicted gene 45720
Cpgi21110 8 118638842 to 118639114 272 CpG island CpG island 21110
D8Mit322 8 118719348 to 118719453 105 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 322
Gm22999 8 118726900 to 118726987 87 + snoRNA gene predicted gene, 22999
Tssr79662 8 118733384 to 118733388 4 + TSS region transcription start site region 79662
D8Mit275 8 118734610 to 118734807 197 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 275
Cpgi21111 8 118753918 to 118754074 156 CpG island CpG island 21111
Tssr79663 8 118799386 to 118799394 8 + TSS region transcription start site region 79663
Tssr79664 8 118891176 to 118891182 6 + TSS region transcription start site region 79664
D8Mit362 8 118899638 to 118899763 125 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 362
Tssr83115 8 118906604 to 118906606 2 - TSS region transcription start site region 83115
Tssr79665 8 118970389 to 118970393 4 + TSS region transcription start site region 79665
D8Mit168 8 118985838 to 118985973 135 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 168