Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:110944896-111346118

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
St3gal2 8 110919922 to 110972480 52558 + protein coding gene ST3 beta-galactoside alpha-2,3-sialyltransferase 2
Gm39251 8 110942300 to 110949609 7309 - lncRNA gene predicted gene, 39251
Tssr79448 8 110956335 to 110956360 25 + TSS region transcription start site region 79448
Cpgi21046 8 110957586 to 110957943 357 CpG island CpG island 21046
Tssr79449 8 110957727 to 110957753 26 + TSS region transcription start site region 79449
Tssr79450 8 110957761 to 110957774 13 + TSS region transcription start site region 79450
Tssr79451 8 110961168 to 110961171 3 + TSS region transcription start site region 79451
Cpgi21047 8 110962175 to 110962418 243 CpG island CpG island 21047
Tssr2687 8 110962848 to 110962851 3 + TSS region transcription start site region 2687
Cpgi21048 8 110969981 to 110970462 481 CpG island CpG island 21048
Ddx19a 8 110974996 to 110997800 22804 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 19a
Cpgi21049 8 110997465 to 110998057 592 CpG island CpG island 21049
Tssr82892 8 110997764 to 110997839 75 - TSS region transcription start site region 82892
Tssr79452 8 110997869 to 110997901 32 + TSS region transcription start site region 79452
Ddx19b 8 111003188 to 111031751 28563 - protein coding gene DEAD (Asp-Glu-Ala-Asp) box polypeptide 19b
Mir3473d 8 111016450 to 111016530 80 - miRNA gene microRNA 3473d
Cpgi21050 8 111027450 to 111028030 580 CpG island CpG island 21050
Tssr82893 8 111027670 to 111027721 51 - TSS region transcription start site region 82893
Tssr82894 8 111027724 to 111027745 21 - TSS region transcription start site region 82894
Tssr82895 8 111027752 to 111027791 39 - TSS region transcription start site region 82895
Tssr82896 8 111030915 to 111030918 3 - TSS region transcription start site region 82896
Cpgi21051 8 111031531 to 111031828 297 CpG island CpG island 21051
Tssr82897 8 111031712 to 111031747 35 - TSS region transcription start site region 82897
Aars 8 111033144 to 111057664 24520 + protein coding gene alanyl-tRNA synthetase
Cpgi21052 8 111033803 to 111034252 449 CpG island CpG island 21052
Tssr79453 8 111033861 to 111033886 25 + TSS region transcription start site region 79453
Tssr79454 8 111033890 to 111033932 42 + TSS region transcription start site region 79454
Tssr79455 8 111033937 to 111033949 12 + TSS region transcription start site region 79455
Tssr79456 8 111034098 to 111034165 67 + TSS region transcription start site region 79456
Tssr79457 8 111036885 to 111036899 14 + TSS region transcription start site region 79457
Tssr79458 8 111036902 to 111036912 10 + TSS region transcription start site region 79458
Gm24103 8 111041948 to 111042024 76 - miRNA gene predicted gene, 24103
Tssr79459 8 111043294 to 111043313 19 + TSS region transcription start site region 79459
Cpgi21053 8 111056091 to 111057404 1313 CpG island CpG island 21053
Tssr79460 8 111056319 to 111056384 65 + TSS region transcription start site region 79460
Exosc6 8 111056339 to 111057664 1325 + protein coding gene exosome component 6
Tssr79461 8 111056541 to 111056600 59 + TSS region transcription start site region 79461
Gm38523 8 111058697 to 111065159 6462 - protein coding gene predicted gene, 38523
Tssr82898 8 111061767 to 111061773 6 - TSS region transcription start site region 82898
Tssr82899 8 111061814 to 111061822 8 - TSS region transcription start site region 82899
Cpgi21054 8 111062393 to 111062561 168 CpG island CpG island 21054
n-TGgcc2 8 111062561 to 111062631 70 + tRNA gene nuclear encoded tRNA glycine 2 (anticodon GCC)
Clec18a 8 111069496 to 111092424 22928 - protein coding gene C-type lectin domain family 18, member A
Tssr82900 8 111081137 to 111081148 11 - TSS region transcription start site region 82900
Tssr82901 8 111081670 to 111081679 9 - TSS region transcription start site region 82901
Tssr82902 8 111081695 to 111081730 35 - TSS region transcription start site region 82902
Tssr82903 8 111081735 to 111081740 5 - TSS region transcription start site region 82903
Tssr82904 8 111081813 to 111081824 11 - TSS region transcription start site region 82904
Tssr82905 8 111081832 to 111081843 11 - TSS region transcription start site region 82905
Tssr82906 8 111081855 to 111081871 16 - TSS region transcription start site region 82906
Tssr82907 8 111081898 to 111081916 18 - TSS region transcription start site region 82907
Tssr82908 8 111082018 to 111082021 3 - TSS region transcription start site region 82908
Tssr82909 8 111082043 to 111082078 35 - TSS region transcription start site region 82909
Cpgi21055 8 111093956 to 111095305 1349 CpG island CpG island 21055
Pdpr 8 111094630 to 111137074 42444 + protein coding gene pyruvate dehydrogenase phosphatase regulatory subunit
9430091E24Rik 8 111128886 to 111145480 16594 - lncRNA gene RIKEN cDNA 9430091E24 gene
Cpgi21056 8 111144896 to 111146118 1222 CpG island CpG island 21056
Glg1 8 111157548 to 111259202 101654 - protein coding gene golgi apparatus protein 1
Gm23193 8 111194964 to 111195045 81 + miRNA gene predicted gene, 23193
D8Mit316 8 111198869 to 111199016 147 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 316
D8Mit115 8 111238743 to 111238884 141 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 115
Tssr82910 8 111247287 to 111247291 4 - TSS region transcription start site region 82910
Tssr82911 8 111253877 to 111253908 31 - TSS region transcription start site region 82911
Tssr82912 8 111258135 to 111258141 6 - TSS region transcription start site region 82912
Cpgi21057 8 111258381 to 111259582 1201 CpG island CpG island 21057
Tssr82913 8 111259192 to 111259221 29 - TSS region transcription start site region 82913
Tssr79462 8 111259291 to 111259314 23 + TSS region transcription start site region 79462
Rfwd3 8 111270944 to 111300222 29278 - protein coding gene ring finger and WD repeat domain 3
Tssr82914 8 111281495 to 111281499 4 - TSS region transcription start site region 82914
8430437B07Rik 8 111286611 to 111287766 1155 unclassified gene RIKEN cDNA 8430437B07 gene
Cpgi21058 8 111299448 to 111300501 1053 CpG island CpG island 21058
Tssr82915 8 111300189 to 111300206 17 - TSS region transcription start site region 82915
Tssr82916 8 111300226 to 111300241 15 - TSS region transcription start site region 82916
Gm6014 8 111309675 to 111310962 1287 - pseudogene predicted gene 6014
Tssr82917 8 111310208 to 111310211 3 - TSS region transcription start site region 82917
Mlkl 8 111311797 to 111338177 26380 - protein coding gene mixed lineage kinase domain-like
Gm45712 8 111318037 to 111318430 393 + pseudogene predicted gene 45712
D8Ertd362e 8 111323922 to 111324141 219 DNA segment DNA segment, Chr 8, ERATO Doi 362, expressed
Tssr82918 8 111325724 to 111325738 14 - TSS region transcription start site region 82918
Tssr82919 8 111333560 to 111333571 11 - TSS region transcription start site region 82919
Tssr82920 8 111337747 to 111337758 11 - TSS region transcription start site region 82920
Tssr82921 8 111337761 to 111337827 66 - TSS region transcription start site region 82921
Cpgi21059 8 111337787 to 111338290 503 CpG island CpG island 21059
Tssr79463 8 111337838 to 111337900 62 + TSS region transcription start site region 79463
Tssr82922 8 111337883 to 111337914 31 - TSS region transcription start site region 82922
Tssr82923 8 111338152 to 111338231 79 - TSS region transcription start site region 82923
Tssr82924 8 111338422 to 111338434 12 - TSS region transcription start site region 82924
Tssr82925 8 111338441 to 111338461 20 - TSS region transcription start site region 82925
Fa2h 8 111345138 to 111393821 48683 - protein coding gene fatty acid 2-hydroxylase