Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:107096288-108066302

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97 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Terf2 8 107069400 to 107096547 27147 - protein coding gene telomeric repeat binding factor 2
Cpgi20986 8 107095916 to 107096691 775 CpG island CpG island 20986
Tssr82790 8 107096376 to 107096406 30 - TSS region transcription start site region 82790
Tssr82791 8 107096510 to 107096562 52 - TSS region transcription start site region 82791
Tssr79288 8 107096918 to 107096935 17 + TSS region transcription start site region 79288
Cpgi20987 8 107109121 to 107109464 343 CpG island CpG island 20987
C630050I24Rik 8 107119110 to 107119892 782 + unclassified non-coding RNA gene RIKEN cDNA C630050I24 gene
Gm39240 8 107124087 to 107126761 2674 + lncRNA gene predicted gene, 39240
Cpgi20988 8 107150377 to 107151188 811 CpG island CpG island 20988
Tssr79289 8 107150621 to 107150690 69 + TSS region transcription start site region 79289
Cyb5b 8 107150661 to 107187470 36809 + protein coding gene cytochrome b5 type B
Tssr79290 8 107153737 to 107153742 5 + TSS region transcription start site region 79290
Tssr79291 8 107165909 to 107165925 16 + TSS region transcription start site region 79291
Tssr2681 8 107168091 to 107168127 36 + TSS region transcription start site region 2681
Tssr79292 8 107183099 to 107183103 4 + TSS region transcription start site region 79292
4930517G24Rik 8 107205122 to 107217659 12537 + lncRNA gene RIKEN cDNA 4930517G24 gene
Tssr79293 8 107205316 to 107205353 37 + TSS region transcription start site region 79293
Tssr79294 8 107205367 to 107205374 7 + TSS region transcription start site region 79294
D8Mit185 8 107211742 to 107211882 140 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 185
Rps18-ps3 8 107262793 to 107263248 455 - pseudogene ribosomal protein S18, pseudogene 3
Tssr82792 8 107269703 to 107269728 25 - TSS region transcription start site region 82792
Cpgi20989 8 107293027 to 107294494 1467 CpG island CpG island 20989
Tssr82793 8 107293201 to 107293204 3 - TSS region transcription start site region 82793
Tssr79295 8 107293463 to 107293483 20 + TSS region transcription start site region 79295
Nfat5 8 107293470 to 107379517 86047 + protein coding gene nuclear factor of activated T cells 5
Tssr79296 8 107293500 to 107293517 17 + TSS region transcription start site region 79296
Tssr79297 8 107294405 to 107294410 5 + TSS region transcription start site region 79297
3830408D07Rik 8 107309787 to 107310803 1016 unclassified gene RIKEN cDNA 3830408D07 gene
1110035E04Rik 8 107312676 to 107314036 1360 unclassified gene RIKEN cDNA 1110035E04 gene
Tssr79298 8 107324931 to 107324936 5 + TSS region transcription start site region 79298
Tssr79299 8 107334900 to 107334908 8 + TSS region transcription start site region 79299
C430050I21Rik 8 107335640 to 107336470 830 unclassified gene RIKEN cDNA C430050I21 gene
Tssr79300 8 107344435 to 107344438 3 + TSS region transcription start site region 79300
Tssr79301 8 107367107 to 107367118 11 + TSS region transcription start site region 79301
Tssr79302 8 107368064 to 107368098 34 + TSS region transcription start site region 79302
Tssr79303 8 107368195 to 107368206 11 + TSS region transcription start site region 79303
Tssr79304 8 107368293 to 107368305 12 + TSS region transcription start site region 79304
Tssr79305 8 107368543 to 107368589 46 + TSS region transcription start site region 79305
Tssr79306 8 107368777 to 107368791 14 + TSS region transcription start site region 79306
Tssr79307 8 107368796 to 107368830 34 + TSS region transcription start site region 79307
Tssr2682 8 107373217 to 107373231 14 + TSS region transcription start site region 2682
Tssr79308 8 107374318 to 107374354 36 + TSS region transcription start site region 79308
Nqo1 8 107388225 to 107403205 14980 - protein coding gene NAD(P)H dehydrogenase, quinone 1
Tssr82794 8 107388682 to 107388685 3 - TSS region transcription start site region 82794
Tssr82795 8 107389083 to 107389097 14 - TSS region transcription start site region 82795
Tssr82796 8 107393129 to 107393162 33 - TSS region transcription start site region 82796
Tssr82797 8 107403197 to 107403213 16 - TSS region transcription start site region 82797
Tssr79309 8 107408584 to 107408589 5 + TSS region transcription start site region 79309
Nob1 8 107412489 to 107425038 12549 - protein coding gene NIN1/RPN12 binding protein 1 homolog
Tssr82798 8 107421551 to 107421558 7 - TSS region transcription start site region 82798
Cpgi20990 8 107424529 to 107425254 725 CpG island CpG island 20990
Tssr82799 8 107425029 to 107425056 27 - TSS region transcription start site region 82799
Cpgi20991 8 107436027 to 107437026 999 CpG island CpG island 20991
Tssr79310 8 107436355 to 107436421 66 + TSS region transcription start site region 79310
Wwp2 8 107436365 to 107558595 122230 + protein coding gene WW domain containing E3 ubiquitin protein ligase 2
A430107J10Rik 8 107436833 to 107438477 1644 unclassified gene RIKEN cDNA A430107J10 gene
Rps26-ps1 8 107439150 to 107439585 435 - pseudogene ribosomal protein S26, pseudogene 1
Tssr82800 8 107439585 to 107439593 8 - TSS region transcription start site region 82800
Gm45900 8 107444284 to 107444692 408 - pseudogene predicted gene 45900
Gm39241 8 107446962 to 107450204 3242 - lncRNA gene predicted gene, 39241
Tssr79311 8 107454134 to 107454160 26 + TSS region transcription start site region 79311
E430022E14Rik 8 107455455 to 107457324 1869 unclassified gene RIKEN cDNA E430022E14 gene
Tssr79312 8 107457777 to 107457790 13 + TSS region transcription start site region 79312
Tssr79313 8 107457796 to 107457805 9 + TSS region transcription start site region 79313
Tssr79314 8 107502562 to 107502597 35 + TSS region transcription start site region 79314
Tssr79315 8 107503182 to 107503202 20 + TSS region transcription start site region 79315
Tssr82801 8 107505711 to 107505725 14 - TSS region transcription start site region 82801
Tssr79316 8 107506257 to 107506264 7 + TSS region transcription start site region 79316
Tssr79317 8 107545011 to 107545026 15 + TSS region transcription start site region 79317
Tssr79318 8 107545032 to 107545046 14 + TSS region transcription start site region 79318
Tssr79319 8 107545059 to 107545075 16 + TSS region transcription start site region 79319
Tssr79320 8 107545083 to 107545107 24 + TSS region transcription start site region 79320
Mir140 8 107551244 to 107551313 69 + miRNA gene microRNA 140
Psmd7 8 107580381 to 107588464 8083 - protein coding gene proteasome (prosome, macropain) 26S subunit, non-ATPase, 7
Tssr79321 8 107580899 to 107580997 98 + TSS region transcription start site region 79321
Tssr82802 8 107581057 to 107581081 24 - TSS region transcription start site region 82802
Tssr82803 8 107581145 to 107581160 15 - TSS region transcription start site region 82803
Tssr82804 8 107581190 to 107581226 36 - TSS region transcription start site region 82804
Tssr82805 8 107581241 to 107581269 28 - TSS region transcription start site region 82805
Tssr82806 8 107581288 to 107581302 14 - TSS region transcription start site region 82806
Cpgi20992 8 107587768 to 107588664 896 CpG island CpG island 20992
Tssr82807 8 107588230 to 107588241 11 - TSS region transcription start site region 82807
Tssr82808 8 107588392 to 107588463 71 - TSS region transcription start site region 82808
D8Mit138 8 107666641 to 107666832 191 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 138
Cpgi20993 8 107668141 to 107668524 383 CpG island CpG island 20993
Tssr82809 8 107682228 to 107682251 23 - TSS region transcription start site region 82809
Gm8940 8 107690626 to 107690844 218 - pseudogene predicted gene 8940
Gm42040 8 107779197 to 107823290 44093 + lncRNA gene predicted gene, 42040
Gm39242 8 107800429 to 107834337 33908 - lncRNA gene predicted gene, 39242
Cpgi20994 8 107824631 to 107824829 198 CpG island CpG island 20994
Gm23646 8 107840957 to 107841057 100 + miRNA gene predicted gene, 23646
Gm22825 8 107842451 to 107842551 100 + miRNA gene predicted gene, 22825
Tssr2683 8 107846842 to 107846850 8 + TSS region transcription start site region 2683
5033426E14Rik 8 107869685 to 107885011 15326 + lincRNA gene RIKEN cDNA 5033426E14 gene
Tssr82810 8 107966916 to 107966919 3 - TSS region transcription start site region 82810
Cpgi20995 8 108027613 to 108027938 325 CpG island CpG island 20995
D8Mit313 8 108031552 to 108031676 124 DNA segment DNA Segment, Chr 8, Massachusetts Institute of Technology 313