Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 8:105444621-105654640

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lrrc36 8 105413608 to 105464086 50478 + protein coding gene leucine rich repeat containing 36
Tssr79147 8 105453562 to 105453566 4 + TSS region transcription start site region 79147
Tssr79148 8 105455276 to 105455287 11 + TSS region transcription start site region 79148
Tppp3 8 105467492 to 105471422 3930 - protein coding gene tubulin polymerization-promoting protein family member 3
Cpgi20933 8 105467888 to 105468631 743 CpG island CpG island 20933
Tssr82653 8 105467905 to 105467934 29 - TSS region transcription start site region 82653
Cpgi20934 8 105471153 to 105471620 467 CpG island CpG island 20934
Tssr82654 8 105471328 to 105471343 15 - TSS region transcription start site region 82654
Tssr82655 8 105471383 to 105471400 17 - TSS region transcription start site region 82655
Tssr82656 8 105471447 to 105471458 11 - TSS region transcription start site region 82656
Tssr82657 8 105471481 to 105471487 6 - TSS region transcription start site region 82657
Zdhhc1 8 105472423 to 105496902 24479 - protein coding gene zinc finger, DHHC domain containing 1
Cpgi20935 8 105472461 to 105472741 280 CpG island CpG island 20935
Tssr82658 8 105482848 to 105482861 13 - TSS region transcription start site region 82658
Tssr82659 8 105494659 to 105494675 16 - TSS region transcription start site region 82659
Cpgi20936 8 105496494 to 105497314 820 CpG island CpG island 20936
Tssr82660 8 105496975 to 105496982 7 - TSS region transcription start site region 82660
Tssr82661 8 105497023 to 105497068 45 - TSS region transcription start site region 82661
Tssr82662 8 105497089 to 105497094 5 - TSS region transcription start site region 82662
Tssr79149 8 105503198 to 105503202 4 + TSS region transcription start site region 79149
Gm8838 8 105503406 to 105503946 540 + pseudogene predicted gene 8838
Cpgi20937 8 105518339 to 105519327 988 CpG island CpG island 20937
Tssr79150 8 105518736 to 105518753 17 + TSS region transcription start site region 79150
Hsd11b2 8 105518755 to 105523988 5233 + protein coding gene hydroxysteroid 11-beta dehydrogenase 2
Tssr79151 8 105518884 to 105518917 33 + TSS region transcription start site region 79151
Tssr79152 8 105518929 to 105518947 18 + TSS region transcription start site region 79152
Atp6v0d1 8 105524470 to 105566040 41570 - protein coding gene ATPase, H+ transporting, lysosomal V0 subunit D1
Tssr82663 8 105525357 to 105525371 14 - TSS region transcription start site region 82663
Tssr82664 8 105525380 to 105525394 14 - TSS region transcription start site region 82664
Tssr82665 8 105529376 to 105529415 39 - TSS region transcription start site region 82665
D8Mit198 8 105541565 to 105541762 197 DNA segment DNA segment, Chr 8, Massachusetts Institute of Technology 198
Tssr82666 8 105549621 to 105549640 19 - TSS region transcription start site region 82666
D8Dcr39 8 105561758 to 105561859 101 DNA segment DNA Segment, Chr 8, Derry C. Roopenian 39
Cpgi20938 8 105565355 to 105567089 1734 CpG island CpG island 20938
Tssr82667 8 105565906 to 105565914 8 - TSS region transcription start site region 82667
Tssr82668 8 105565921 to 105565947 26 - TSS region transcription start site region 82668
Tssr82669 8 105565957 to 105565982 25 - TSS region transcription start site region 82669
Tssr82670 8 105565985 to 105566071 86 - TSS region transcription start site region 82670
Tssr79153 8 105566171 to 105566187 16 + TSS region transcription start site region 79153
Gm38250 8 105566324 to 105578109 11785 + antisense lncRNA gene predicted gene, 38250
Agrp 8 105566695 to 105579845 13150 - protein coding gene agouti related neuropeptide
Tssr82671 8 105567632 to 105567648 16 - TSS region transcription start site region 82671
Tssr82672 8 105579855 to 105579864 9 - TSS region transcription start site region 82672
Gm45855 8 105585321 to 105586200 879 - pseudogene predicted gene 45855
Tssr79154 8 105594069 to 105594088 19 + TSS region transcription start site region 79154
Tssr79155 8 105595093 to 105595102 9 + TSS region transcription start site region 79155
Tssr79156 8 105595134 to 105595156 22 + TSS region transcription start site region 79156
Tssr79157 8 105595194 to 105595203 9 + TSS region transcription start site region 79157
Tssr79158 8 105602824 to 105602826 2 + TSS region transcription start site region 79158
Cpgi20939 8 105604667 to 105606026 1359 CpG island CpG island 20939
Tssr79159 8 105605022 to 105605040 18 + TSS region transcription start site region 79159
Tssr79160 8 105605041 to 105605056 15 + TSS region transcription start site region 79160
Tssr79161 8 105605220 to 105605306 86 + TSS region transcription start site region 79161
Ripor1 8 105605255 to 105622219 16964 + protein coding gene RHO family interacting cell polarization regulator 1
Cpgi20940 8 105606502 to 105606719 217 CpG island CpG island 20940
Tssr82673 8 105606682 to 105606693 11 - TSS region transcription start site region 82673
Tssr82674 8 105606698 to 105606710 12 - TSS region transcription start site region 82674
Cpgi20941 8 105613195 to 105613562 367 CpG island CpG island 20941
Tssr79162 8 105613226 to 105613243 17 + TSS region transcription start site region 79162
Tssr79163 8 105613246 to 105613266 20 + TSS region transcription start site region 79163
Cpgi20942 8 105613822 to 105614614 792 CpG island CpG island 20942
Mir1966 8 105615466 to 105615573 107 + miRNA gene microRNA 1966
Tssr79164 8 105617727 to 105617789 62 + TSS region transcription start site region 79164
Tssr82675 8 105617736 to 105617752 16 - TSS region transcription start site region 82675
Tssr79165 8 105617790 to 105617836 46 + TSS region transcription start site region 79165
Tssr79166 8 105617879 to 105617901 22 + TSS region transcription start site region 79166
Tssr82676 8 105623145 to 105623166 21 - TSS region transcription start site region 82676
Tssr79167 8 105623389 to 105623405 16 + TSS region transcription start site region 79167
Tssr79168 8 105623424 to 105623439 15 + TSS region transcription start site region 79168
Gm5914 8 105624336 to 105637474 13138 - lincRNA gene predicted gene 5914
Tssr82677 8 105629127 to 105629130 3 - TSS region transcription start site region 82677
Gm38384 8 105633750 to 105634871 1121 + unclassified gene predicted gene, 38384
Tssr82678 8 105634854 to 105634872 18 - TSS region transcription start site region 82678
Cpgi20943 8 105635677 to 105637904 2227 CpG island CpG island 20943
Tssr79169 8 105635781 to 105635802 21 + TSS region transcription start site region 79169
Tssr82679 8 105636154 to 105636177 23 - TSS region transcription start site region 82679
Tssr79170 8 105636488 to 105636499 11 + TSS region transcription start site region 79170
Tssr79171 8 105636509 to 105636589 80 + TSS region transcription start site region 79171
Ctcf 8 105636568 to 105682922 46354 + protein coding gene CCCTC-binding factor
Tssr79172 8 105636590 to 105636612 22 + TSS region transcription start site region 79172
Tssr79173 8 105636926 to 105636979 53 + TSS region transcription start site region 79173
Tssr82680 8 105637316 to 105637333 17 - TSS region transcription start site region 82680
Tssr82681 8 105637363 to 105637392 29 - TSS region transcription start site region 82681
Tssr82682 8 105637403 to 105637497 94 - TSS region transcription start site region 82682
Tssr82683 8 105637907 to 105637932 25 - TSS region transcription start site region 82683
Tssr79174 8 105649319 to 105649323 4 + TSS region transcription start site region 79174