Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:99858772-101381256

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403 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Spcs2 7 99837569 to 99863462 25893 - protein coding gene signal peptidase complex subunit 2 homolog (S. cerevisiae)
Cpgi19472 7 99858508 to 99859329 821 CpG island CpG island 19472
Tssr73712 7 99858872 to 99858906 34 - TSS region transcription start site region 73712
Tssr73713 7 99858910 to 99858921 11 - TSS region transcription start site region 73713
Tssr73714 7 99858992 to 99859007 15 - TSS region transcription start site region 73714
Tssr68077 7 99859059 to 99859120 61 + TSS region transcription start site region 68077
Tssr68078 7 99859123 to 99859140 17 + TSS region transcription start site region 68078
Xrra1 7 99859218 to 99917824 58606 + protein coding gene X-ray radiation resistance associated 1
Tssr73715 7 99862664 to 99862665 1 - TSS region transcription start site region 73715
Tssr73716 7 99863356 to 99863374 18 - TSS region transcription start site region 73716
Tssr68079 7 99863494 to 99863504 10 + TSS region transcription start site region 68079
Tssr73717 7 99865320 to 99865337 17 - TSS region transcription start site region 73717
Tssr73718 7 99865351 to 99865367 16 - TSS region transcription start site region 73718
Gm38405 7 99870666 to 99889358 18692 - antisense lncRNA gene predicted gene, 38405
Tssr2341 7 99879734 to 99879744 10 - TSS region transcription start site region 2341
Tssr73719 7 99889292 to 99889303 11 - TSS region transcription start site region 73719
Tssr73720 7 99889326 to 99889368 42 - TSS region transcription start site region 73720
A930030B08Rik 7 99900192 to 99904156 3964 - unclassified gene RIKEN cDNA A930030B08 gene
Tssr73721 7 99906206 to 99906217 11 - TSS region transcription start site region 73721
Tssr73722 7 99906224 to 99906231 7 - TSS region transcription start site region 73722
Tssr68080 7 99906326 to 99906353 27 + TSS region transcription start site region 68080
Tssr68081 7 99906407 to 99906415 8 + TSS region transcription start site region 68081
Tssr68082 7 99906443 to 99906450 7 + TSS region transcription start site region 68082
Tssr68083 7 99906516 to 99906525 9 + TSS region transcription start site region 68083
Tssr68084 7 99906532 to 99906536 4 + TSS region transcription start site region 68084
Tssr68085 7 99906537 to 99906552 15 + TSS region transcription start site region 68085
Tssr68086 7 99915789 to 99915792 3 + TSS region transcription start site region 68086
Cpgi19473 7 99916719 to 99918015 1296 CpG island CpG island 19473
Tssr73723 7 99917402 to 99917431 29 - TSS region transcription start site region 73723
Rnf169 7 99920254 to 99980448 60194 - protein coding gene ring finger protein 169
Tssr73724 7 99922346 to 99922367 21 - TSS region transcription start site region 73724
Gm5115 7 99929646 to 99932287 2641 - unclassified gene predicted gene 5115
D7Wsu69e 7 99936426 to 99936675 249 DNA segment DNA segment, Chr 7, Wayne State University 69, expressed
Gm18959 7 99945062 to 99945624 562 + pseudogene predicted gene, 18959
Tssr73725 7 99965708 to 99965728 20 - TSS region transcription start site region 73725
Cpgi19474 7 99979553 to 99980559 1006 CpG island CpG island 19474
Tssr68087 7 99979710 to 99979732 22 + TSS region transcription start site region 68087
Tssr68088 7 99979755 to 99979771 16 + TSS region transcription start site region 68088
Tssr73726 7 99980408 to 99980417 9 - TSS region transcription start site region 73726
Tssr73727 7 99980431 to 99980477 46 - TSS region transcription start site region 73727
Gm17931 7 99996775 to 99997405 630 + pseudogene predicted gene, 17931
Cpgi19475 7 100005712 to 100006833 1121 CpG island CpG island 19475
Tssr68089 7 100006018 to 100006023 5 + TSS region transcription start site region 68089
Tssr68090 7 100006034 to 100006064 30 + TSS region transcription start site region 68090
Tssr68091 7 100006066 to 100006085 19 + TSS region transcription start site region 68091
Chrdl2 7 100006404 to 100034728 28324 + protein coding gene chordin-like 2
Cpgi19476 7 100042086 to 100042613 527 CpG island CpG island 19476
Pold3 7 100082111 to 100121560 39449 - protein coding gene polymerase (DNA-directed), delta 3, accessory subunit
Tssr68092 7 100100287 to 100100334 47 + TSS region transcription start site region 68092
Tssr73728 7 100101433 to 100101460 27 - TSS region transcription start site region 73728
Tssr73729 7 100113847 to 100113850 3 - TSS region transcription start site region 73729
Tssr73730 7 100120523 to 100120549 26 - TSS region transcription start site region 73730
Cpgi19477 7 100120852 to 100121842 990 CpG island CpG island 19477
Tssr73731 7 100121046 to 100121094 48 - TSS region transcription start site region 73731
Tssr73732 7 100121432 to 100121442 10 - TSS region transcription start site region 73732
Tssr73733 7 100121446 to 100121511 65 - TSS region transcription start site region 73733
Tssr73734 7 100121512 to 100121524 12 - TSS region transcription start site region 73734
Gm34760 7 100131880 to 100137487 5607 + lncRNA gene predicted gene, 34760
Cpgi19478 7 100159015 to 100160279 1264 CpG island CpG island 19478
Tssr68093 7 100159241 to 100159315 74 + TSS region transcription start site region 68093
Lipt2 7 100159277 to 100160931 1654 + protein coding gene lipoyl(octanoyl) transferase 2 (putative)
Tssr68094 7 100159317 to 100159330 13 + TSS region transcription start site region 68094
Gm39057 7 100163323 to 100171156 7833 - lncRNA gene predicted gene, 39057
Tssr68095 7 100172455 to 100172457 2 + TSS region transcription start site region 68095
Gm34821 7 100173423 to 100176631 3208 - antisense lncRNA gene predicted gene, 34821
Kcne3 7 100176507 to 100184869 8362 + protein coding gene potassium voltage-gated channel, Isk-related subfamily, gene 3
Tssr73735 7 100176598 to 100176615 17 - TSS region transcription start site region 73735
Tssr68096 7 100176663 to 100176680 17 + TSS region transcription start site region 68096
Tssr68097 7 100176683 to 100176690 7 + TSS region transcription start site region 68097
Tssr68098 7 100176702 to 100176711 9 + TSS region transcription start site region 68098
Cpgi19479 7 100178548 to 100179205 657 CpG island CpG island 19479
Tssr68099 7 100178679 to 100178704 25 + TSS region transcription start site region 68099
Tssr68100 7 100178732 to 100178739 7 + TSS region transcription start site region 68100
Gm45994 7 100189261 to 100192666 3405 - lncRNA gene predicted gene, 45994
Gm7067 7 100197111 to 100198348 1237 - pseudogene predicted gene 7067
Gm34877 7 100200776 to 100227209 26433 - lncRNA gene predicted gene, 34877
Cpgi19480 7 100227094 to 100228243 1149 CpG island CpG island 19480
Tssr68101 7 100227311 to 100227384 73 + TSS region transcription start site region 68101
Pgm2l1 7 100227394 to 100278868 51474 + protein coding gene phosphoglucomutase 2-like 1
Tssr68102 7 100227462 to 100227504 42 + TSS region transcription start site region 68102
Tssr68103 7 100227624 to 100227635 11 + TSS region transcription start site region 68103
Tssr68104 7 100227638 to 100227706 68 + TSS region transcription start site region 68104
Tssr68105 7 100227740 to 100227781 41 + TSS region transcription start site region 68105
Tssr68106 7 100227783 to 100227788 5 + TSS region transcription start site region 68106
Tssr68107 7 100235119 to 100235122 3 + TSS region transcription start site region 68107
Tssr68108 7 100264645 to 100264667 22 + TSS region transcription start site region 68108
Gpx2-ps1 7 100264675 to 100265245 570 + pseudogene glutathione peroxidase 2, pseudogene 1
Tssr68109 7 100276648 to 100276650 2 + TSS region transcription start site region 68109
Cpgi19481 7 100285162 to 100285876 714 CpG island CpG island 19481
Tssr68110 7 100285478 to 100285564 86 + TSS region transcription start site region 68110
P4ha3 7 100285520 to 100319699 34179 + protein coding gene procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha polypeptide III
Tssr68111 7 100319030 to 100319048 18 + TSS region transcription start site region 68111
Tssr68112 7 100319094 to 100319105 11 + TSS region transcription start site region 68112
Tssr68113 7 100319249 to 100319272 23 + TSS region transcription start site region 68113
Tssr68114 7 100319404 to 100319433 29 + TSS region transcription start site region 68114
Ppme1 7 100326737 to 100371896 45159 - protein coding gene protein phosphatase methylesterase 1
Tssr73736 7 100355038 to 100355076 38 - TSS region transcription start site region 73736
Cpgi19482 7 100371587 to 100372498 911 CpG island CpG island 19482
Tssr73737 7 100371773 to 100371788 15 - TSS region transcription start site region 73737
Tssr73738 7 100371889 to 100371988 99 - TSS region transcription start site region 73738
Tssr68115 7 100372051 to 100372084 33 + TSS region transcription start site region 68115
Tssr68116 7 100372092 to 100372101 9 + TSS region transcription start site region 68116
Tssr68117 7 100372224 to 100372383 159 + TSS region transcription start site region 68117
C2cd3 7 100372233 to 100470152 97919 + protein coding gene C2 calcium-dependent domain containing 3
Tssr68118 7 100372388 to 100372424 36 + TSS region transcription start site region 68118
Gm44571 7 100381594 to 100382308 714 + pseudogene predicted gene 44571
Gm37716 7 100458460 to 100459406 946 + unclassified gene predicted gene, 37716
Gm10603 7 100463049 to 100467382 4333 - antisense lncRNA gene predicted gene 10603
Tssr73739 7 100467125 to 100467148 23 - TSS region transcription start site region 73739
Tssr73740 7 100467149 to 100467171 22 - TSS region transcription start site region 73740
Tssr73741 7 100467217 to 100467244 27 - TSS region transcription start site region 73741
Tssr73742 7 100467253 to 100467266 13 - TSS region transcription start site region 73742
Tssr68119 7 100472929 to 100472938 9 + TSS region transcription start site region 68119
Tssr68120 7 100472960 to 100472975 15 + TSS region transcription start site region 68120
Tssr68121 7 100472985 to 100472998 13 + TSS region transcription start site region 68121
Ucp3 7 100472991 to 100486432 13441 + protein coding gene uncoupling protein 3 (mitochondrial, proton carrier)
Tssr68122 7 100473016 to 100473024 8 + TSS region transcription start site region 68122
Cpgi19483 7 100479569 to 100480313 744 CpG island CpG island 19483
Cpgi19484 7 100492718 to 100493710 992 CpG island CpG island 19484
Tssr68123 7 100493319 to 100493324 5 + TSS region transcription start site region 68123
Tssr68124 7 100493349 to 100493370 21 + TSS region transcription start site region 68124
Ucp2 7 100493358 to 100499629 6271 + protein coding gene uncoupling protein 2 (mitochondrial, proton carrier)
Tssr68125 7 100493770 to 100493814 44 + TSS region transcription start site region 68125
Tssr68126 7 100493829 to 100493848 19 + TSS region transcription start site region 68126
Tssr68127 7 100493939 to 100493955 16 + TSS region transcription start site region 68127
Tssr68128 7 100494044 to 100494088 44 + TSS region transcription start site region 68128
Tssr68129 7 100494269 to 100494330 61 + TSS region transcription start site region 68129
Tssr68130 7 100494891 to 100494896 5 + TSS region transcription start site region 68130
Tssr73743 7 100495677 to 100495695 18 - TSS region transcription start site region 73743
Tssr68131 7 100495987 to 100496007 20 + TSS region transcription start site region 68131
Tssr68132 7 100496727 to 100496797 70 + TSS region transcription start site region 68132
Tssr68133 7 100496871 to 100496895 24 + TSS region transcription start site region 68133
Tssr68134 7 100497099 to 100497127 28 + TSS region transcription start site region 68134
Tssr68135 7 100498099 to 100498113 14 + TSS region transcription start site region 68135
Tssr68136 7 100498117 to 100498142 25 + TSS region transcription start site region 68136
Tssr68137 7 100498151 to 100498210 59 + TSS region transcription start site region 68137
Tssr73744 7 100498208 to 100498276 68 - TSS region transcription start site region 73744
Tssr68138 7 100498241 to 100498252 11 + TSS region transcription start site region 68138
Tssr68139 7 100498340 to 100498361 21 + TSS region transcription start site region 68139
Tssr68140 7 100498362 to 100498373 11 + TSS region transcription start site region 68140
Tssr68141 7 100498389 to 100498408 19 + TSS region transcription start site region 68141
Tssr73745 7 100498400 to 100498456 56 - TSS region transcription start site region 73745
Tssr68142 7 100498731 to 100498743 12 + TSS region transcription start site region 68142
Tssr2342 7 100498748 to 100498755 7 + TSS region transcription start site region 2342
Tssr68143 7 100498764 to 100498801 37 + TSS region transcription start site region 68143
Tssr68144 7 100498814 to 100498827 13 + TSS region transcription start site region 68144
Tssr73746 7 100498821 to 100498862 41 - TSS region transcription start site region 73746
Tssr68145 7 100498828 to 100498830 2 + TSS region transcription start site region 68145
Tssr68146 7 100498839 to 100498852 13 + TSS region transcription start site region 68146
Tssr68147 7 100498854 to 100498876 22 + TSS region transcription start site region 68147
Tssr68148 7 100498886 to 100498899 13 + TSS region transcription start site region 68148
Tssr68149 7 100499228 to 100499245 17 + TSS region transcription start site region 68149
Tssr68150 7 100499266 to 100499283 17 + TSS region transcription start site region 68150
Tssr68151 7 100499298 to 100499316 18 + TSS region transcription start site region 68151
Tssr68152 7 100499331 to 100499358 27 + TSS region transcription start site region 68152
Tssr68153 7 100499359 to 100499381 22 + TSS region transcription start site region 68153
Tssr73747 7 100499391 to 100499406 15 - TSS region transcription start site region 73747
Tssr73748 7 100499449 to 100499476 27 - TSS region transcription start site region 73748
Tssr73749 7 100499508 to 100499536 28 - TSS region transcription start site region 73749
Dnajb13 7 100503011 to 100514815 11804 - protein coding gene DnaJ heat shock protein family (Hsp40) member B13
D7Mit96 7 100505707 to 100505782 75 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 96
Stmm1 7 100505707 to 107683208 7177501 QTL skin tumor modifier of MSM 1
D7Dcr43 7 100505709 to 100505800 91 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 43
Tssr73750 7 100511780 to 100511801 21 - TSS region transcription start site region 73750
Tssr73751 7 100514763 to 100514785 22 - TSS region transcription start site region 73751
Tssr73752 7 100514789 to 100514799 10 - TSS region transcription start site region 73752
Tssr73753 7 100514800 to 100514822 22 - TSS region transcription start site region 73753
Tssr68154 7 100523985 to 100523997 12 + TSS region transcription start site region 68154
Gm8463 7 100524016 to 100524628 612 + pseudogene predicted gene 8463
Tssr73754 7 100533459 to 100533481 22 - TSS region transcription start site region 73754
Gm39058 7 100535591 to 100536980 1389 - lncRNA gene predicted gene, 39058
Cpgi19485 7 100536863 to 100537324 461 CpG island CpG island 19485
Tssr68155 7 100537052 to 100537139 87 + TSS region transcription start site region 68155
Coa4 7 100537100 to 100540372 3272 + protein coding gene cytochrome c oxidase assembly factor 4
Tssr68156 7 100537170 to 100537179 9 + TSS region transcription start site region 68156
Tssr68157 7 100537192 to 100537221 29 + TSS region transcription start site region 68157
Tssr73755 7 100539316 to 100539326 10 - TSS region transcription start site region 73755
Tssr73756 7 100539589 to 100539598 9 - TSS region transcription start site region 73756
Tssr68158 7 100539899 to 100539927 28 + TSS region transcription start site region 68158
Gm39059 7 100542338 to 100543180 842 - lincRNA gene predicted gene, 39059
Mrpl48 7 100549117 to 100607996 58879 - protein coding gene mitochondrial ribosomal protein L48
Tssr73757 7 100550745 to 100550754 9 - TSS region transcription start site region 73757
Gm44648 7 100571922 to 100572250 328 + pseudogene predicted gene 44648
Cox20b 7 100580267 to 100580619 352 + pseudogene cytochrome c oxidase assembly protein 20B
Tssr68159 7 100580278 to 100580302 24 + TSS region transcription start site region 68159
Cpgi19486 7 100582715 to 100583183 468 CpG island CpG island 19486
Tssr73758 7 100583072 to 100583124 52 - TSS region transcription start site region 73758
Tssr73759 7 100589945 to 100589993 48 - TSS region transcription start site region 73759
Tssr73760 7 100590852 to 100590862 10 - TSS region transcription start site region 73760
Cpgi19487 7 100607071 to 100608710 1639 CpG island CpG island 19487
Tssr68160 7 100607556 to 100607618 62 + TSS region transcription start site region 68160
Rab6a 7 100607586 to 100641268 33682 + protein coding gene RAB6A, member RAS oncogene family
Tssr73761 7 100607658 to 100607692 34 - TSS region transcription start site region 73761
Tssr68161 7 100607660 to 100607823 163 + TSS region transcription start site region 68161
Tssr68162 7 100607836 to 100607854 18 + TSS region transcription start site region 68162
Tssr68163 7 100607887 to 100607899 12 + TSS region transcription start site region 68163
Tssr68164 7 100607912 to 100607992 80 + TSS region transcription start site region 68164
Tssr73762 7 100608229 to 100608268 39 - TSS region transcription start site region 73762
Tssr73763 7 100608293 to 100608308 15 - TSS region transcription start site region 73763
D930046H04Rik 7 100618772 to 100621256 2484 unclassified non-coding RNA gene RIKEN cDNA D930046H04 gene