Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:67400206-69550345

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187 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tbthq1 7 62700000 to 68100000 5400000 QTL trabecular bone thickness QTL 1
Tssr67078 7 67421270 to 67421300 30 + TSS region transcription start site region 67078
Tssr67079 7 67421330 to 67421346 16 + TSS region transcription start site region 67079
Gm33926 7 67428901 to 67440397 11496 - lincRNA gene predicted gene, 33926
Cpgi19227 7 67428943 to 67429236 293 CpG island CpG island 19227
Gm39025 7 67488011 to 67522791 34780 + lncRNA gene predicted gene, 39025
Tssr67080 7 67495063 to 67495067 4 + TSS region transcription start site region 67080
Lrrc28 7 67513410 to 67645268 131858 - protein coding gene leucine rich repeat containing 28
Rta1 7 67518279 to 89440781 21922502 QTL retinal aging 1
Gm34079 7 67524345 to 67543587 19242 + lncRNA gene predicted gene, 34079
Cpgi19228 7 67528922 to 67529110 188 CpG island CpG island 19228
Tssr72854 7 67528973 to 67528996 23 - TSS region transcription start site region 72854
Gm23233 7 67570567 to 67570703 136 - snoRNA gene predicted gene, 23233
Gm32983 7 67593659 to 67594163 504 + pseudogene predicted gene, 32983
Tssr72855 7 67619977 to 67619997 20 - TSS region transcription start site region 72855
Tssr72856 7 67620016 to 67620028 12 - TSS region transcription start site region 72856
Gm45100 7 67637765 to 67638155 390 + pseudogene predicted gene 45100
Cpgi19229 7 67644911 to 67645900 989 CpG island CpG island 19229
Tssr72857 7 67645195 to 67645273 78 - TSS region transcription start site region 72857
Tssr72858 7 67645280 to 67645332 52 - TSS region transcription start site region 72858
Tssr67081 7 67645429 to 67645461 32 + TSS region transcription start site region 67081
Tssr67082 7 67645469 to 67645506 37 + TSS region transcription start site region 67082
Ttc23 7 67647319 to 67726577 79258 + protein coding gene tetratricopeptide repeat domain 23
Tssr67083 7 67647405 to 67647456 51 + TSS region transcription start site region 67083
Tssr67084 7 67647458 to 67647482 24 + TSS region transcription start site region 67084
Tssr67085 7 67647484 to 67647557 73 + TSS region transcription start site region 67085
Tssr67086 7 67647570 to 67647583 13 + TSS region transcription start site region 67086
Tssr67087 7 67655146 to 67655181 35 + TSS region transcription start site region 67087
Tssr67088 7 67655414 to 67655442 28 + TSS region transcription start site region 67088
Tssr67089 7 67660856 to 67660904 48 + TSS region transcription start site region 67089
Tssr67090 7 67660916 to 67660923 7 + TSS region transcription start site region 67090
Tssr67091 7 67679053 to 67679070 17 + TSS region transcription start site region 67091
Tssr67092 7 67679107 to 67679117 10 + TSS region transcription start site region 67092
Tssr67093 7 67679248 to 67679261 13 + TSS region transcription start site region 67093
Gm44669 7 67679335 to 67681303 1968 - unclassified gene predicted gene 44669
Gm34140 7 67711491 to 67717180 5689 - lncRNA gene predicted gene, 34140
Tssr72859 7 67720184 to 67720189 5 - TSS region transcription start site region 72859
Synm 7 67730161 to 67759742 29581 - protein coding gene synemin, intermediate filament protein
Tssr72860 7 67736524 to 67736547 23 - TSS region transcription start site region 72860
Tssr72861 7 67757621 to 67757626 5 - TSS region transcription start site region 72861
Cpgi19230 7 67758564 to 67760065 1501 CpG island CpG island 19230
Gm45102 7 67759317 to 67760173 856 + unclassified gene predicted gene 45102
Tssr72862 7 67759735 to 67759759 24 - TSS region transcription start site region 72862
Tssr72863 7 67759764 to 67759779 15 - TSS region transcription start site region 72863
Gm23844 7 67778410 to 67778530 120 - miRNA gene predicted gene, 23844
Gm7583 7 67782777 to 67783781 1004 - pseudogene predicted gene 7583
4833412C05Rik 7 67784538 to 67803496 18958 - lincRNA gene RIKEN cDNA 4833412C05 gene
Tssr72864 7 67803489 to 67803532 43 - TSS region transcription start site region 72864
Cpgi19231 7 67803539 to 67804280 741 CpG island CpG island 19231
D7Dcr29 7 67806655 to 67806746 91 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 29
Gm34350 7 67819250 to 67829618 10368 + lincRNA gene predicted gene, 34350
Gm39027 7 67832910 to 67849868 16958 - lincRNA gene predicted gene, 39027
Cpgi19232 7 67849151 to 67849514 363 CpG island CpG island 19232
Gm44666 7 67886195 to 67886585 390 - pseudogene predicted gene 44666
D7Mit277 7 67920759 to 67920927 168 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 277
Tssr67094 7 67937139 to 67937149 10 + TSS region transcription start site region 67094
Tssr67095 7 67950226 to 67950230 4 + TSS region transcription start site region 67095
Cpgi19233 7 67950535 to 67954076 3541 CpG island CpG island 19233
Tssr67096 7 67951769 to 67951772 3 + TSS region transcription start site region 67096
Tssr67097 7 67951857 to 67951910 53 + TSS region transcription start site region 67097
Tssr67098 7 67952004 to 67952065 61 + TSS region transcription start site region 67098
Tssr67099 7 67952082 to 67952092 10 + TSS region transcription start site region 67099
Tssr67100 7 67952369 to 67952428 59 + TSS region transcription start site region 67100
Tssr67101 7 67952435 to 67952450 15 + TSS region transcription start site region 67101
Tssr67102 7 67952817 to 67952828 11 + TSS region transcription start site region 67102
Igf1r 7 67952827 to 68233668 280841 + protein coding gene insulin-like growth factor I receptor
Tssr67103 7 67952877 to 67952922 45 + TSS region transcription start site region 67103
Tssr72865 7 67952949 to 67952958 9 - TSS region transcription start site region 72865
Cpgi19234 7 67958041 to 67958420 379 CpG island CpG island 19234
Tssr67104 7 67958326 to 67958330 4 + TSS region transcription start site region 67104
Tssr67105 7 67998217 to 67998220 3 + TSS region transcription start site region 67105
Tssr67106 7 68059103 to 68059107 4 + TSS region transcription start site region 67106
Tssr67107 7 68081139 to 68081144 5 + TSS region transcription start site region 67107
Tssr67108 7 68102299 to 68102303 4 + TSS region transcription start site region 67108
Tssr67109 7 68104155 to 68104159 4 + TSS region transcription start site region 67109
D930030O05Rik 7 68106694 to 68113354 6660 unclassified non-coding RNA gene RIKEN cDNA D930030O05 gene
Cpgi19235 7 68129135 to 68129416 281 CpG island CpG island 19235
Tssr67110 7 68133785 to 68133792 7 + TSS region transcription start site region 67110
Tssr67111 7 68133805 to 68133812 7 + TSS region transcription start site region 67111
Tssr2295 7 68133832 to 68133842 10 + TSS region transcription start site region 2295
Tssr67112 7 68148564 to 68148582 18 + TSS region transcription start site region 67112
Tssr67113 7 68148583 to 68148594 11 + TSS region transcription start site region 67113
Tssr67114 7 68148961 to 68148965 4 + TSS region transcription start site region 67114
Tssr72866 7 68149831 to 68149850 19 - TSS region transcription start site region 72866
Tssr72867 7 68157577 to 68157605 28 - TSS region transcription start site region 72867
Tssr67115 7 68189564 to 68189586 22 + TSS region transcription start site region 67115
Tssr67116 7 68189912 to 68189923 11 + TSS region transcription start site region 67116
Tssr67117 7 68190032 to 68190065 33 + TSS region transcription start site region 67117
Tssr67118 7 68226579 to 68226591 12 + TSS region transcription start site region 67118
Tssr67119 7 68226616 to 68226655 39 + TSS region transcription start site region 67119
Tssr67120 7 68228109 to 68228122 13 + TSS region transcription start site region 67120
Tssr67121 7 68230295 to 68230302 7 + TSS region transcription start site region 67121
Pgpep1l 7 68236610 to 68264233 27623 - protein coding gene pyroglutamyl-peptidase I-like
Tssr72868 7 68249583 to 68249589 6 - TSS region transcription start site region 72868
Tssr72869 7 68250513 to 68250520 7 - TSS region transcription start site region 72869
Tssr67122 7 68250797 to 68250803 6 + TSS region transcription start site region 67122
Tssr67123 7 68263762 to 68263769 7 + TSS region transcription start site region 67123
Cpgi19236 7 68264046 to 68264459 413 CpG island CpG island 19236
Tssr72870 7 68264201 to 68264232 31 - TSS region transcription start site region 72870
Tssr72871 7 68264581 to 68264596 15 - TSS region transcription start site region 72871
Tssr72872 7 68264600 to 68264622 22 - TSS region transcription start site region 72872
Tssr72873 7 68264644 to 68264653 9 - TSS region transcription start site region 72873
Tssr67124 7 68264845 to 68264856 11 + TSS region transcription start site region 67124
Tssr72874 7 68265477 to 68265507 30 - TSS region transcription start site region 72874
Gm16157 7 68266339 to 68276594 10255 - antisense lncRNA gene predicted gene 16157
Fam169b 7 68273839 to 68363089 89250 + protein coding gene family with sequence similarity 169, member B
Tssr67125 7 68274517 to 68274522 5 + TSS region transcription start site region 67125
Tssr72875 7 68275107 to 68275120 13 - TSS region transcription start site region 72875
Tssr67126 7 68275868 to 68275879 11 + TSS region transcription start site region 67126
Tssr67127 7 68275964 to 68275966 2 + TSS region transcription start site region 67127
Tssr67128 7 68275970 to 68276025 55 + TSS region transcription start site region 67128
Cpgi19237 7 68275972 to 68276261 289 CpG island CpG island 19237
Tssr67129 7 68276108 to 68276134 26 + TSS region transcription start site region 67129
Tssr72876 7 68276253 to 68276264 11 - TSS region transcription start site region 72876
Tssr72877 7 68277059 to 68277102 43 - TSS region transcription start site region 72877
Tssr67130 7 68277530 to 68277539 9 + TSS region transcription start site region 67130
Tssr67131 7 68277747 to 68277755 8 + TSS region transcription start site region 67131
Tssr72878 7 68278718 to 68278740 22 - TSS region transcription start site region 72878
Tssr67132 7 68279166 to 68279181 15 + TSS region transcription start site region 67132
Tssr67133 7 68279196 to 68279201 5 + TSS region transcription start site region 67133
Tssr67134 7 68279203 to 68279209 6 + TSS region transcription start site region 67134
Tssr67135 7 68279217 to 68279226 9 + TSS region transcription start site region 67135
Tssr2296 7 68282696 to 68282705 9 - TSS region transcription start site region 2296
Tssr72879 7 68282718 to 68282733 15 - TSS region transcription start site region 72879
Tssr67136 7 68282906 to 68282931 25 + TSS region transcription start site region 67136
Tssr2297 7 68282951 to 68282958 7 + TSS region transcription start site region 2297
Tssr67137 7 68283803 to 68283805 2 + TSS region transcription start site region 67137
Tssr72880 7 68283811 to 68283821 10 - TSS region transcription start site region 72880
Tssr72881 7 68283839 to 68283868 29 - TSS region transcription start site region 72881
Tssr2298 7 68284145 to 68284169 24 + TSS region transcription start site region 2298
Tssr72882 7 68285943 to 68285952 9 - TSS region transcription start site region 72882
Tssr67138 7 68286133 to 68286153 20 + TSS region transcription start site region 67138
Tssr67139 7 68286166 to 68286178 12 + TSS region transcription start site region 67139
Tssr67140 7 68286182 to 68286206 24 + TSS region transcription start site region 67140
Tssr67141 7 68287121 to 68287130 9 + TSS region transcription start site region 67141
Tssr67142 7 68287180 to 68287203 23 + TSS region transcription start site region 67142
Tssr67143 7 68287420 to 68287438 18 + TSS region transcription start site region 67143
Tssr67144 7 68288209 to 68288219 10 + TSS region transcription start site region 67144
Tssr67145 7 68289476 to 68289480 4 + TSS region transcription start site region 67145
Tssr67146 7 68289546 to 68289550 4 + TSS region transcription start site region 67146
4930405G09Rik 7 68315973 to 68317032 1059 - unclassified gene RIKEN cDNA 4930405G09 gene
Cpgi19238 7 68318612 to 68318914 302 CpG island CpG island 19238
Tssr67147 7 68329244 to 68329284 40 + TSS region transcription start site region 67147
Gm44888 7 68332989 to 68335529 2540 + unclassified gene predicted gene 44888
Tssr67148 7 68338337 to 68338340 3 + TSS region transcription start site region 67148
Gm16158 7 68351384 to 68353581 2197 - antisense lncRNA gene predicted gene 16158
Tssr72883 7 68353196 to 68353221 25 - TSS region transcription start site region 72883
Tssr67149 7 68364104 to 68364110 6 + TSS region transcription start site region 67149
Gm44889 7 68384779 to 68392029 7250 + lincRNA gene predicted gene 44889
4933436H12Rik 7 68417424 to 68426133 8709 + lincRNA gene RIKEN cDNA 4933436H12 gene
Tssr67150 7 68418451 to 68418459 8 + TSS region transcription start site region 67150
Tssr67151 7 68433069 to 68433075 6 + TSS region transcription start site region 67151
Tssr67152 7 68433093 to 68433109 16 + TSS region transcription start site region 67152
Gm44886 7 68439373 to 68441722 2349 + lincRNA gene predicted gene 44886
Bwq11 7 68475206 to 68475345 139 QTL body weight QTL 11
D7Mit233 7 68475206 to 68475345 139 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 233
Eae43 7 68475206 to 68475345 139 QTL experimental allergic encephalomyelitis susceptibility 43
Gm34549 7 68488071 to 68490897 2826 + lincRNA gene predicted gene, 34549
Gm44887 7 68598677 to 68598854 177 - pseudogene predicted gene 44887
Tssr67153 7 68618433 to 68618446 13 + TSS region transcription start site region 67153
Tssr67154 7 68618452 to 68618464 12 + TSS region transcription start site region 67154
Gm5334 7 68618838 to 68619557 719 + pseudogene predicted pseudogene 5334
Gm44692 7 68719170 to 68726467 7297 - lincRNA gene predicted gene 44692
Arrdc4 7 68736994 to 68749238 12244 - protein coding gene arrestin domain containing 4
Tssr72884 7 68742629 to 68742643 14 - TSS region transcription start site region 72884
Tssr67155 7 68748193 to 68748220 27 + TSS region transcription start site region 67155
Cpgi19239 7 68748638 to 68749579 941 CpG island CpG island 19239
Tssr72885 7 68749170 to 68749233 63 - TSS region transcription start site region 72885
Tssr72886 7 68749242 to 68749251 9 - TSS region transcription start site region 72886
Tssr72887 7 68768328 to 68768332 4 - TSS region transcription start site region 72887
Gm34612 7 68792322 to 68818694 26372 + lncRNA gene predicted gene, 34612
Gm34664 7 68843099 to 68916016 72917 - lincRNA gene predicted gene, 34664
Tssr67156 7 68860242 to 68860249 7 + TSS region transcription start site region 67156
Tssr72888 7 68915989 to 68916016 27 - TSS region transcription start site region 72888
Gm23795 7 68952100 to 68952236 136 - snoRNA gene predicted gene, 23795
Tssr67157 7 68979441 to 68979452 11 + TSS region transcription start site region 67157
Gm44691 7 68989404 to 69008173 18769 + lincRNA gene predicted gene 44691
Gm34782 7 69056742 to 69079291 22549 + lncRNA gene predicted gene, 34782
Gm39029 7 69056822 to 69064762 7940 - lncRNA gene predicted gene, 39029
Gm5342 7 69209884 to 69210886 1002 + pseudogene predicted gene 5342
Gm44533 7 69259595 to 69259862 267 + pseudogene predicted gene 44533
Gm34838 7 69391548 to 69400198 8650 - lincRNA gene predicted gene, 34838
Gm38584 7 69485424 to 69490801 5377 - lincRNA gene predicted gene, 38584
4930402F11Rik 7 69496094 to 69499689 3595 + lincRNA gene RIKEN cDNA 4930402F11 gene
Tssr67158 7 69496097 to 69496132 35 + TSS region transcription start site region 67158
Gm23815 7 69498579 to 69498685 106 - snRNA gene predicted gene, 23815
V125Dq6 7 69500000 to 69500000 0 QTL vitamin D active form serum level QTL 6