Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:56104011-57654591

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55 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Herc2 7 56050196 to 56231800 181604 + protein coding gene HECT and RLD domain containing E3 ubiquitin protein ligase 2
Tssr66931 7 56107438 to 56107443 5 + TSS region transcription start site region 66931
Gm19187 7 56216362 to 56217249 887 - pseudogene predicted gene, 19187
Tssr66932 7 56239743 to 56239781 38 + TSS region transcription start site region 66932
Oca2 7 56239760 to 56536518 296758 + protein coding gene oculocutaneous albinism II
Tsve1 7 56239760 to 87493512 31253752 QTL variable short tail (Tsv) enhancer 1
Tssr66933 7 56239784 to 56239828 44 + TSS region transcription start site region 66933
Gm44506 7 56242186 to 56243150 964 - antisense lncRNA gene predicted gene 44506
D7Mit295 7 56311921 to 56312062 141 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 295
D10Jhu51 7 56414907 to 56415132 225 DNA segment DNA segment, Chr 10, Johns Hopkins University 51
Gm2995 7 56716462 to 56717783 1321 protein coding gene predicted gene 2995
Gabrg3 7 56716465 to 57387188 670723 - protein coding gene gamma-aminobutyric acid (GABA) A receptor, subunit gamma 3
Cpgi19168 7 56716528 to 56716737 209 CpG island CpG island 19168
Gm44979 7 56748274 to 56749285 1011 + pseudogene predicted gene 44979
Gm17984 7 56804605 to 56805441 836 - pseudogene predicted gene, 17984
Gm44976 7 56838001 to 56838261 260 - pseudogene predicted gene 44976
Gm44977 7 56855432 to 56855851 419 - pseudogene predicted gene 44977
Gm17987 7 56879011 to 56879591 580 + pseudogene predicted gene, 17987
Tssr72658 7 56901447 to 56901448 1 - TSS region transcription start site region 72658
Gm18642 7 57026081 to 57027480 1399 + pseudogene predicted gene, 18642
Gm18308 7 57055183 to 57056450 1267 - pseudogene predicted gene, 18308
Tssr72659 7 57165177 to 57165182 5 - TSS region transcription start site region 72659
D7Mit159 7 57239039 to 57239186 147 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 159
Tssr72660 7 57240290 to 57240294 4 - TSS region transcription start site region 72660
Gm39017 7 57276321 to 57281650 5329 - lncRNA gene predicted gene, 39017
Tssr72661 7 57312766 to 57312793 27 - TSS region transcription start site region 72661
Tssr72662 7 57313092 to 57313096 4 - TSS region transcription start site region 72662
Cpgi19169 7 57386547 to 57387498 951 CpG island CpG island 19169
Tssr72663 7 57386972 to 57386991 19 - TSS region transcription start site region 72663
Tssr72664 7 57387159 to 57387170 11 - TSS region transcription start site region 72664
Tssr72665 7 57387172 to 57387222 50 - TSS region transcription start site region 72665
Gm9962 7 57387272 to 57409941 22669 + antisense lncRNA gene predicted gene 9962
Gabra5 7 57407672 to 57510059 102387 - protein coding gene gamma-aminobutyric acid (GABA) A receptor, subunit alpha 5
Tssr66934 7 57419645 to 57419658 13 + TSS region transcription start site region 66934
Tssr66935 7 57419671 to 57419674 3 + TSS region transcription start site region 66935
Tssr66936 7 57468584 to 57468587 3 + TSS region transcription start site region 66936
Cpgi19170 7 57508795 to 57510269 1474 CpG island CpG island 19170
Tssr72666 7 57509379 to 57509395 16 - TSS region transcription start site region 72666
Tssr72667 7 57509397 to 57509410 13 - TSS region transcription start site region 72667
Tssr72668 7 57509411 to 57509425 14 - TSS region transcription start site region 72668
Tssr72669 7 57509439 to 57509453 14 - TSS region transcription start site region 72669
Tssr72670 7 57509916 to 57509976 60 - TSS region transcription start site region 72670
Tssr72671 7 57509984 to 57509993 9 - TSS region transcription start site region 72671
Tssr72672 7 57509995 to 57510056 61 - TSS region transcription start site region 72672
Gm42385 7 57519645 to 57590410 70765 - lncRNA gene predicted gene, 42385
Hfhl1 7 57574300 to 80632588 23058288 QTL high-frequency hearing loss 1
Mir6389 7 57581061 to 57581162 101 + miRNA gene microRNA 6389
Cpgi19171 7 57590476 to 57592373 1897 CpG island CpG island 19171
Tssr66937 7 57590503 to 57590523 20 + TSS region transcription start site region 66937
Gabrb3 7 57590518 to 57828802 238284 + protein coding gene gamma-aminobutyric acid (GABA) A receptor, subunit beta 3
Del(7Gabrb3-Ube3a)1Yhj 7 57590518 to 59306733 1716215 chromosomal deletion deletion, Chr 7, Yong-hui Jiang 1
Tssr66938 7 57590526 to 57590553 27 + TSS region transcription start site region 66938
Tssr66939 7 57590565 to 57590572 7 + TSS region transcription start site region 66939
Tssr66940 7 57591147 to 57591191 44 + TSS region transcription start site region 66940
Tssr66941 7 57591193 to 57591203 10 + TSS region transcription start site region 66941