Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:55931462-57502783

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60 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cyfip1 7 55841962 to 55932633 90671 + protein coding gene cytoplasmic FMR1 interacting protein 1
Nipa2 7 55931287 to 55962476 31189 - protein coding gene non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)
Cpgi19164 7 55961915 to 55962709 794 CpG island CpG island 19164
Tssr72654 7 55962424 to 55962461 37 - TSS region transcription start site region 72654
Tssr72655 7 55962466 to 55962481 15 - TSS region transcription start site region 72655
Tssr66928 7 55962520 to 55962552 32 + TSS region transcription start site region 66928
A230056P14Rik 7 55962531 to 55980096 17565 + lncRNA gene RIKEN cDNA A230056P14 gene
Cpgi19165 7 55968253 to 55968479 226 CpG island CpG island 19165
Gm44509 7 55973519 to 55974842 1323 - unclassified gene predicted gene 44509
Nipa1 7 55978484 to 56019573 41089 - protein coding gene non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human)
Gm15888 7 55979927 to 55980850 923 + unclassified non-coding RNA gene predicted gene 15888
Gm39016 7 55988073 to 55993284 5211 + lncRNA gene predicted gene, 39016
Gm44508 7 55994014 to 55995170 1156 - unclassified gene predicted gene 44508
Gm44510 7 56012948 to 56017479 4531 - unclassified gene predicted gene 44510
Rps12l1 7 56014016 to 56014414 398 + pseudogene ribosomal protein S12-like 1
Cpgi19166 7 56018924 to 56019890 966 CpG island CpG island 19166
Tssr72656 7 56019472 to 56019512 40 - TSS region transcription start site region 72656
Tssr72657 7 56019559 to 56019605 46 - TSS region transcription start site region 72657
Gm34121 7 56038866 to 56049974 11108 - lncRNA gene predicted gene, 34121
Cpgi19167 7 56049788 to 56050716 928 CpG island CpG island 19167
Tssr66929 7 56050135 to 56050217 82 + TSS region transcription start site region 66929
Del(7Herc2-Mkrn3)13FRdni 7 56050196 to 62420139 6369943 chromosomal deletion deletion, Chr 7, R D Nicholls13F
Dp(7Herc2-Mkrn3)1Taku 7 56050196 to 62420139 6369943 chromosomal duplication duplication, Chr 7, Toru Takumi 1
Herc2 7 56050196 to 56231800 181604 + protein coding gene HECT and RLD domain containing E3 ubiquitin protein ligase 2
Tssr66930 7 56050341 to 56050352 11 + TSS region transcription start site region 66930
Tssr66931 7 56107438 to 56107443 5 + TSS region transcription start site region 66931
Gm19187 7 56216362 to 56217249 887 - pseudogene predicted gene, 19187
Tssr66932 7 56239743 to 56239781 38 + TSS region transcription start site region 66932
Tsve1 7 56239760 to 87493512 31253752 QTL variable short tail (Tsv) enhancer 1
Oca2 7 56239760 to 56536518 296758 + protein coding gene oculocutaneous albinism II
Tssr66933 7 56239784 to 56239828 44 + TSS region transcription start site region 66933
Gm44506 7 56242186 to 56243150 964 - antisense lncRNA gene predicted gene 44506
D7Mit295 7 56311921 to 56312062 141 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 295
D10Jhu51 7 56414907 to 56415132 225 DNA segment DNA segment, Chr 10, Johns Hopkins University 51
Gm2995 7 56716462 to 56717783 1321 protein coding gene predicted gene 2995
Gabrg3 7 56716465 to 57387188 670723 - protein coding gene gamma-aminobutyric acid (GABA) A receptor, subunit gamma 3
Cpgi19168 7 56716528 to 56716737 209 CpG island CpG island 19168
Gm44979 7 56748274 to 56749285 1011 + pseudogene predicted gene 44979
Gm17984 7 56804605 to 56805441 836 - pseudogene predicted gene, 17984
Gm44976 7 56838001 to 56838261 260 - pseudogene predicted gene 44976
Gm44977 7 56855432 to 56855851 419 - pseudogene predicted gene 44977
Gm17987 7 56879011 to 56879591 580 + pseudogene predicted gene, 17987
Tssr72658 7 56901447 to 56901448 1 - TSS region transcription start site region 72658
Gm18642 7 57026081 to 57027480 1399 + pseudogene predicted gene, 18642
Gm18308 7 57055183 to 57056450 1267 - pseudogene predicted gene, 18308
Tssr72659 7 57165177 to 57165182 5 - TSS region transcription start site region 72659
D7Mit159 7 57239039 to 57239186 147 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 159
Tssr72660 7 57240290 to 57240294 4 - TSS region transcription start site region 72660
Gm39017 7 57276321 to 57281650 5329 - lncRNA gene predicted gene, 39017
Tssr72661 7 57312766 to 57312793 27 - TSS region transcription start site region 72661
Tssr72662 7 57313092 to 57313096 4 - TSS region transcription start site region 72662
Cpgi19169 7 57386547 to 57387498 951 CpG island CpG island 19169
Tssr72663 7 57386972 to 57386991 19 - TSS region transcription start site region 72663
Tssr72664 7 57387159 to 57387170 11 - TSS region transcription start site region 72664
Tssr72665 7 57387172 to 57387222 50 - TSS region transcription start site region 72665
Gm9962 7 57387272 to 57409941 22669 + antisense lncRNA gene predicted gene 9962
Gabra5 7 57407672 to 57510059 102387 - protein coding gene gamma-aminobutyric acid (GABA) A receptor, subunit alpha 5
Tssr66934 7 57419645 to 57419658 13 + TSS region transcription start site region 66934
Tssr66935 7 57419671 to 57419674 3 + TSS region transcription start site region 66935
Tssr66936 7 57468584 to 57468587 3 + TSS region transcription start site region 66936