Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:39848159-41099890

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58 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prnr2 7 18994869 to 40024609 21029740 QTL prion resistance 2
4930435C17Rik 7 39789235 to 39910970 121735 - lincRNA gene RIKEN cDNA 4930435C17 gene
Gm34052 7 39863526 to 39870691 7165 + lncRNA gene predicted gene, 34052
Gm44992 7 39869131 to 39978319 109188 - lincRNA gene predicted gene 44992
Tssr72107 7 39910944 to 39910952 8 - TSS region transcription start site region 72107
Tssr72108 7 39910964 to 39910975 11 - TSS region transcription start site region 72108
D7Dcr9 7 40024460 to 40024609 149 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 9
D7Mit228 7 40024463 to 40024609 146 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 228
Litsq2 7 40024463 to 40024609 146 QTL litter size QTL 2
D7Mit228.2 7 40024587 to 40024698 111 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 228.2
D7Mit270 7 40031842 to 40031986 144 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 270
D7Dcr10 7 40031852 to 40031978 126 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 10
D7Mit52 7 40072199 to 40072361 162 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 52
Gm38199 7 40077405 to 40080681 3276 - unclassified gene predicted gene, 38199
Gm6851 7 40190937 to 40191331 394 + pseudogene predicted pseudogene 6851
D7Mit80 7 40239148 to 40239292 144 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 80
Bdt4 7 40239148 to 40239292 144 QTL bone density traits 4
4933404I11Rik 7 40262705 to 40269753 7048 + lincRNA gene RIKEN cDNA 4933404I11 gene
Gm38996 7 40295866 to 40303819 7953 + lncRNA gene predicted gene, 38996
Gm24910 7 40363450 to 40363721 271 + unclassified non-coding RNA gene predicted gene, 24910
Gm28807 7 40373302 to 40469240 95938 - lincRNA gene predicted gene 28807
Pdcc1 7 40417107 to 40417107 0 QTL plasmacytoid dentritic cell compartment 1
4921507H08Rik 7 40473159 to 40474890 1731 unclassified gene RIKEN cDNA 4921507H08 gene
Tssr72109 7 40535039 to 40535042 3 - TSS region transcription start site region 72109
Tssr2206 7 40541085 to 40541087 2 - TSS region transcription start site region 2206
Tssr72110 7 40636454 to 40636457 3 - TSS region transcription start site region 72110
Tssr65957 7 40674734 to 40674744 10 + TSS region transcription start site region 65957
4933402C06Rik 7 40674737 to 40691260 16523 + lincRNA gene RIKEN cDNA 4933402C06 gene
Gm45008 7 40820618 to 40821110 492 - unclassified gene predicted gene 45008
A230077H06Rik 7 40849153 to 40898324 49171 - antisense lncRNA gene RIKEN cDNA A230077H06 gene
Gm28307 7 40876543 to 40885785 9242 + lincRNA gene predicted gene 28307
Gm25784 7 40879658 to 40879738 80 + snRNA gene predicted gene, 25784
Tssr65958 7 40893672 to 40893686 14 + TSS region transcription start site region 65958
Cpgi18917 7 40898089 to 40900465 2376 CpG island CpG island 18917
Tssr65959 7 40898184 to 40898213 29 + TSS region transcription start site region 65959
Vstm2b 7 40898342 to 40929972 31630 + protein coding gene V-set and transmembrane domain containing 2B
Tssr72111 7 40898604 to 40898619 15 - TSS region transcription start site region 72111
Tssr65960 7 40898747 to 40898778 31 + TSS region transcription start site region 65960
Tssr65961 7 40898783 to 40898819 36 + TSS region transcription start site region 65961
Tssr65962 7 40898932 to 40898943 11 + TSS region transcription start site region 65962
Tssr65963 7 40898947 to 40898960 13 + TSS region transcription start site region 65963
Cpgi18918 7 40901266 to 40901577 311 CpG island CpG island 18918
Cpgi18919 7 40902309 to 40902993 684 CpG island CpG island 18919
Tssr65964 7 40902618 to 40902637 19 + TSS region transcription start site region 65964
Gm29293 7 40969919 to 40974538 4619 + pseudogene predicted gene 29293
Tssr65965 7 40987549 to 40987570 21 + TSS region transcription start site region 65965
Tssr65966 7 40987576 to 40987590 14 + TSS region transcription start site region 65966
4930433I11Rik 7 40987609 to 40994833 7224 + protein coding gene RIKEN cDNA 4930433I11 gene
Gm45171 7 40989645 to 40990380 735 + pseudogene predicted gene 45171
Gm38997 7 41012039 to 41032619 20580 - lincRNA gene predicted gene, 38997
Gm4884 7 41032719 to 41045302 12583 + protein coding gene predicted gene 4884
Topbp1-ps2 7 41048659 to 41048847 188 - pseudogene topoisomerase (DNA) II binding protein 1, pseudogene 2
Gm45172 7 41057302 to 41058602 1300 - unclassified gene predicted gene 45172
1700110I07Rik 7 41060617 to 41089843 29226 - lincRNA gene RIKEN cDNA 1700110I07 gene
Gm28061 7 41067564 to 41068370 806 + pseudogene predicted gene 28061
Gm44839 7 41077625 to 41078025 400 - lincRNA gene predicted gene 44839
Gm9239 7 41095674 to 41099462 3788 + pseudogene predicted gene 9239
Abbp3 7 103860803 to 40024463 -63836340 QTL A/J and C57BL/6 blood pressure 3