Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:33670518-34940543

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166 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Rpl23a-ps12 7 33697270 to 33697737 467 + pseudogene ribosomal protein L23A, pseudogene 12
Scgb2b24 7 33737193 to 33739295 2102 - protein coding gene secretoglobin, family 2B, member 24
Tssr71961 7 33739303 to 33739322 19 - TSS region transcription start site region 71961
Tssr2197 7 33741838 to 33741843 5 + TSS region transcription start site region 2197
D7Mit308 7 33742910 to 33743025 115 DNA segment DNA Segment, Chr 7, Massachusetts Institute of Technology 308
D7Dcr5 7 33742913 to 33743013 100 DNA segment DNA Segment, Chr 7, Derry C. Roopenian 5
Tssr65867 7 33743737 to 33743743 6 + TSS region transcription start site region 65867
Tssr65868 7 33743781 to 33743788 7 + TSS region transcription start site region 65868
Scgb1b24 7 33743799 to 33744982 1183 + protein coding gene secretoglobin, family 1B, member 24
Gm12782 7 33780829 to 33781537 708 - pseudogene predicted gene 12782
Gm28614 7 33795310 to 33796135 825 - pseudogene predicted gene 28614
W6q17 7 33798302 to 58499217 24700915 QTL weight 6 weeks QTL 17
Tailq5 7 33798302 to 58499217 24700915 QTL tail length QTL 5
D7Mit55 7 33798302 to 33798450 148 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 55
Splq7 7 33798302 to 58499217 24700915 QTL spleen weight QTL 7
Epfq5 7 33798302 to 58499217 24700915 QTL epididymal fat pad weight QTL 5
Lvrq6 7 33798302 to 58499217 24700915 QTL liver weight QTL 6
Kidq5 7 33798302 to 58499217 24700915 QTL kidney weight QTL 5
W3q10 7 33798302 to 58499217 24700915 QTL weight 3 weeks QTL 10
W10q18 7 33798302 to 58499217 24700915 QTL weight 10 weeks QTL 18
Gm26443 7 33808117 to 33808226 109 + miRNA gene predicted gene, 26443
Gm12768 7 33844954 to 33845682 728 + pseudogene predicted gene 12768
Scgb2b25-ps 7 33853056 to 33854818 1762 - pseudogene secretoglobin, family 2B, member 25, pseudogene
Tssr71962 7 33854835 to 33854839 4 - TSS region transcription start site region 71962
Scgb1b25-ps 7 33867925 to 33869201 1276 + pseudogene secretoglobin, family 1B, member 25, pseudogene
Gm12757 7 33879295 to 33880094 799 + pseudogene predicted gene 12757
Tssr71963 7 33901815 to 33901822 7 - TSS region transcription start site region 71963
Gm28615 7 33903280 to 33904117 837 - pseudogene predicted gene 28615
Gm12765 7 33937261 to 33938237 976 + pseudogene predicted gene 12765
Scgb2b26 7 33942997 to 33944985 1988 - protein coding gene secretoglobin, family 2B, member 26
Tssr65869 7 33943209 to 33943222 13 + TSS region transcription start site region 65869
Tssr71964 7 33944300 to 33944304 4 - TSS region transcription start site region 71964
Tssr71965 7 33944392 to 33944401 9 - TSS region transcription start site region 71965
Tssr71966 7 33944986 to 33944988 2 - TSS region transcription start site region 71966
Tssr71967 7 33944993 to 33944995 2 - TSS region transcription start site region 71967
Tssr71968 7 33945074 to 33945102 28 - TSS region transcription start site region 71968
Scgb1b26-ps 7 33958805 to 33959986 1181 + pseudogene secretoglobin, family 1B, member 26, pseudogene
Gm28184 7 33986311 to 33986377 66 + pseudogene predicted gene 28184
Gm12773 7 33997071 to 33997591 520 + pseudogene predicted gene 12773
Gm12755 7 33998012 to 34006461 8449 + pseudogene predicted gene 12755
Scgb2b27 7 34011921 to 34013942 2021 - protein coding gene secretoglobin, family 2B, member 27
Tssr71969 7 34013300 to 34013312 12 - TSS region transcription start site region 71969
Tssr71970 7 34013882 to 34013888 6 - TSS region transcription start site region 71970
Tssr71971 7 34013943 to 34013947 4 - TSS region transcription start site region 71971
Tssr71972 7 34013971 to 34013983 12 - TSS region transcription start site region 71972
Tssr65870 7 34021479 to 34021483 4 + TSS region transcription start site region 65870
Tssr65871 7 34021544 to 34021557 13 + TSS region transcription start site region 65871
Scgb1b27 7 34021567 to 34022881 1314 + protein coding gene secretoglobin, family 1B, member 27
Tssr65872 7 34021746 to 34021760 14 + TSS region transcription start site region 65872
Tssr71973 7 34022778 to 34022791 13 - TSS region transcription start site region 71973
Tssr65873 7 34022810 to 34022817 7 + TSS region transcription start site region 65873
Gm12760 7 34036447 to 34037432 985 - pseudogene predicted gene 12760
Tssr71974 7 34037470 to 34037471 1 - TSS region transcription start site region 71974
Gm12779 7 34068555 to 34068697 142 - pseudogene predicted gene 12779
Scgb1b30 7 34095431 to 34100837 5406 + protein coding gene secretoglobin, family 1B, member 30
Tssr65874 7 34095495 to 34095503 8 + TSS region transcription start site region 65874
Wtip 7 34109543 to 34133268 23725 - protein coding gene WT1-interacting protein
Cpgi18841 7 34132336 to 34133867 1531 CpG island CpG island 18841
Tssr71975 7 34133215 to 34133297 82 - TSS region transcription start site region 71975
Uba2 7 34140697 to 34168585 27888 - protein coding gene ubiquitin-like modifier activating enzyme 2
Cpgi18842 7 34167851 to 34168754 903 CpG island CpG island 18842
Tssr71976 7 34168499 to 34168510 11 - TSS region transcription start site region 71976
Tssr71977 7 34168516 to 34168582 66 - TSS region transcription start site region 71977
Tssr65875 7 34168605 to 34168628 23 + TSS region transcription start site region 65875
Tssr65876 7 34168636 to 34168648 12 + TSS region transcription start site region 65876
Tssr65877 7 34168659 to 34168676 17 + TSS region transcription start site region 65877
Gm12778 7 34175712 to 34176044 332 + pseudogene predicted gene 12778
Gm12783 7 34176758 to 34180004 3246 + pseudogene predicted gene 12783
Pdcd2l 7 34184499 to 34196661 12162 - protein coding gene programmed cell death 2-like
Tssr71978 7 34189483 to 34189492 9 - TSS region transcription start site region 71978
Tssr71979 7 34189494 to 34189524 30 - TSS region transcription start site region 71979
Tssr71980 7 34192138 to 34192149 11 - TSS region transcription start site region 71980
Cpgi18843 7 34196048 to 34196841 793 CpG island CpG island 18843
Tssr71981 7 34196139 to 34196157 18 - TSS region transcription start site region 71981
Tssr71982 7 34196178 to 34196192 14 - TSS region transcription start site region 71982
Tssr71983 7 34196641 to 34196675 34 - TSS region transcription start site region 71983
Gpi1 7 34201330 to 34230336 29006 - protein coding gene glucose phosphate isomerase 1
Lar 7 34201330 to 34230336 29006 QTL low antibody response
Tssr71984 7 34207940 to 34207944 4 - TSS region transcription start site region 71984
Tssr71985 7 34209882 to 34209921 39 - TSS region transcription start site region 71985
Tssr71986 7 34213432 to 34213448 16 - TSS region transcription start site region 71986
Tssr71987 7 34213450 to 34213470 20 - TSS region transcription start site region 71987
Tssr71988 7 34221663 to 34221688 25 - TSS region transcription start site region 71988
Tssr71989 7 34223743 to 34223755 12 - TSS region transcription start site region 71989
Gm26762 7 34224755 to 34230236 5481 + lincRNA gene predicted gene, 26762
Tssr71990 7 34229415 to 34229436 21 - TSS region transcription start site region 71990
Tssr71991 7 34229445 to 34229461 16 - TSS region transcription start site region 71991
Cpgi18844 7 34229816 to 34230546 730 CpG island CpG island 18844
Tssr71992 7 34230253 to 34230276 23 - TSS region transcription start site region 71992
Tssr71993 7 34230284 to 34230308 24 - TSS region transcription start site region 71993
Tssr71994 7 34230313 to 34230324 11 - TSS region transcription start site region 71994
Tssr71995 7 34230426 to 34230450 24 - TSS region transcription start site region 71995
Gm12762 7 34231182 to 34233991 2809 - lincRNA gene predicted gene 12762
Gm12758 7 34233293 to 34236732 3439 + antisense lncRNA gene predicted gene 12758
Cpgi18845 7 34233722 to 34234905 1183 CpG island CpG island 18845
Tssr71996 7 34233990 to 34234017 27 - TSS region transcription start site region 71996
Tssr71997 7 34234067 to 34234099 32 - TSS region transcription start site region 71997
Tssr71998 7 34234559 to 34234566 7 - TSS region transcription start site region 71998
4931406P16Rik 7 34236707 to 34313551 76844 - protein coding gene RIKEN cDNA 4931406P16 gene
Tssr71999 7 34242333 to 34242358 25 - TSS region transcription start site region 71999
BC060293 7 34250252 to 34251355 1103 - unclassified gene cDNA sequence BC060293
Gm6096 7 34251038 to 34251493 455 + protein coding gene predicted gene 6096
Tssr72000 7 34292087 to 34292091 4 - TSS region transcription start site region 72000
Tssr72001 7 34305486 to 34305497 11 - TSS region transcription start site region 72001
Tssr72002 7 34305518 to 34305543 25 - TSS region transcription start site region 72002
Cpgi18846 7 34312715 to 34313852 1137 CpG island CpG island 18846
Tssr65878 7 34313018 to 34313026 8 + TSS region transcription start site region 65878
Tssr72003 7 34313489 to 34313500 11 - TSS region transcription start site region 72003
Tssr72004 7 34313508 to 34313528 20 - TSS region transcription start site region 72004
Tssr72005 7 34313531 to 34313568 37 - TSS region transcription start site region 72005
Lsm14a 7 34344637 to 34389637 45000 - protein coding gene LSM14A mRNA processing body assembly factor
Tssr72006 7 34357805 to 34357822 17 - TSS region transcription start site region 72006
Tssr72007 7 34360622 to 34360623 1 - TSS region transcription start site region 72007
Gm44567 7 34362701 to 34365331 2630 - unclassified gene predicted gene 44567
Gm12774 7 34383659 to 34384074 415 + pseudogene predicted gene 12774
Tssr72008 7 34385243 to 34385252 9 - TSS region transcription start site region 72008
Cpgi18847 7 34388580 to 34390232 1652 CpG island CpG island 18847
Tssr65879 7 34388604 to 34388671 67 + TSS region transcription start site region 65879
Gm12764 7 34388665 to 34394779 6114 + antisense lncRNA gene predicted gene 12764
Tssr72009 7 34389461 to 34389473 12 - TSS region transcription start site region 72009
Tssr72010 7 34389575 to 34389638 63 - TSS region transcription start site region 72010
Tssr72011 7 34389684 to 34389695 11 - TSS region transcription start site region 72011
Tssr72012 7 34389699 to 34389720 21 - TSS region transcription start site region 72012
2310043P16Rik 7 34389732 to 34393612 3880 + unclassified gene RIKEN cDNA 2310043P16 gene
Tssr65880 7 34389747 to 34389803 56 + TSS region transcription start site region 65880
Cpgi18848 7 34411021 to 34411288 267 CpG island CpG island 18848
D7Mit79 7 34422737 to 34422848 111 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 79
Gm12766 7 34438137 to 34520885 82748 + lincRNA gene predicted gene 12766
Gm12780 7 34495421 to 34496065 644 - pseudogene predicted gene 12780
Gm31709 7 34501027 to 34501407 380 - pseudogene predicted gene, 31709
Gm35297 7 34522341 to 34547064 24723 - lncRNA gene predicted gene, 35297
Tssr72013 7 34546783 to 34546798 15 - TSS region transcription start site region 72013
Gm12784 7 34547206 to 34560149 12943 + lincRNA gene predicted gene 12784
Cpgi18849 7 34570174 to 34571083 909 CpG island CpG island 18849
Cpgi18850 7 34606071 to 34606325 254 CpG island CpG island 18850
Gm35378 7 34629434 to 34631558 2124 + lncRNA gene predicted gene, 35378
Cpgi18851 7 34630484 to 34630985 501 CpG island CpG island 18851
Gm44837 7 34636996 to 34637712 716 - lincRNA gene predicted gene 44837
Kctd15 7 34639015 to 34655509 16494 - protein coding gene potassium channel tetramerisation domain containing 15
D7Ertd351e 7 34643926 to 34644148 222 DNA segment DNA segment, Chr 7, ERATO Doi 351, expressed
Cpgi18852 7 34652780 to 34655930 3150 CpG island CpG island 18852
Tssr72014 7 34654342 to 34654393 51 - TSS region transcription start site region 72014
Tssr65881 7 34655277 to 34655301 24 + TSS region transcription start site region 65881
Tssr72015 7 34655500 to 34655515 15 - TSS region transcription start site region 72015
Gm12781 7 34655570 to 34661202 5632 + antisense lncRNA gene predicted gene 12781
Tssr65882 7 34659958 to 34659969 11 + TSS region transcription start site region 65882
Tssr65883 7 34659970 to 34660004 34 + TSS region transcription start site region 65883
Gm12756 7 34665413 to 34673999 8586 - lincRNA gene predicted gene 12756
Chst8 7 34674468 to 34812711 138243 - protein coding gene carbohydrate sulfotransferase 8
Cpgi18853 7 34675081 to 34676233 1152 CpG island CpG island 18853
Cpgi18854 7 34693962 to 34694227 265 CpG island CpG island 18854
Tssr2198 7 34725059 to 34725060 1 + TSS region transcription start site region 2198
Tssr65884 7 34743946 to 34743950 4 + TSS region transcription start site region 65884
Tssr72016 7 34748289 to 34748294 5 - TSS region transcription start site region 72016
Cpgi18855 7 34753129 to 34753567 438 CpG island CpG island 18855
D7Mit156 7 34801081 to 34801224 143 DNA segment DNA segment, Chr 7, Massachusetts Institute of Technology 156
Cpgi18856 7 34811527 to 34813354 1827 CpG island CpG island 18856
Tssr72017 7 34812677 to 34812693 16 - TSS region transcription start site region 72017
Gm38987 7 34812993 to 34844179 31186 + lncRNA gene predicted gene, 38987
Cpgi18857 7 34819796 to 34820177 381 CpG island CpG island 18857
D7Ertd1e 7 34854727 to 34854962 235 DNA segment DNA segment, Chr 7, ERATO Doi 1, expressed
Tssr2199 7 34881585 to 34881589 4 - TSS region transcription start site region 2199
Cpgi18858 7 34912243 to 34912880 637 CpG island CpG island 18858
Tssr65885 7 34912400 to 34912415 15 + TSS region transcription start site region 65885
Prt5 7 34912407 to 46742980 11830573 heritable phenotypic marker protease 5
Pepd 7 34912407 to 35044708 132301 + protein coding gene peptidase D