Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:28884729-29084730

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68 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Capn12 7 28881450 to 28893585 12135 + protein coding gene calpain 12
Gm44700 7 28887127 to 28888483 1356 - antisense lncRNA gene predicted gene 44700
Cpgi18726 7 28888193 to 28889145 952 CpG island CpG island 18726
Actn4 7 28893248 to 28962340 69092 - protein coding gene actinin alpha 4
Tssr2175 7 28893701 to 28893708 7 - TSS region transcription start site region 2175
Tssr71582 7 28893738 to 28893763 25 - TSS region transcription start site region 71582
Tssr71583 7 28893839 to 28893850 11 - TSS region transcription start site region 71583
Tssr71584 7 28893980 to 28893992 12 - TSS region transcription start site region 71584
Tssr71585 7 28894145 to 28894183 38 - TSS region transcription start site region 71585
Tssr71586 7 28894345 to 28894361 16 - TSS region transcription start site region 71586
Tssr71587 7 28895012 to 28895034 22 - TSS region transcription start site region 71587
Tssr65578 7 28895114 to 28895119 5 + TSS region transcription start site region 65578
Tssr65579 7 28895177 to 28895190 13 + TSS region transcription start site region 65579
Tssr65580 7 28895219 to 28895228 9 + TSS region transcription start site region 65580
Tssr65581 7 28895237 to 28895257 20 + TSS region transcription start site region 65581
Tssr71588 7 28898098 to 28898132 34 - TSS region transcription start site region 71588
Tssr71589 7 28907294 to 28907299 5 - TSS region transcription start site region 71589
Tssr71590 7 28907349 to 28907367 18 - TSS region transcription start site region 71590
Tssr71591 7 28907375 to 28907392 17 - TSS region transcription start site region 71591
Gm44699 7 28920951 to 28943528 22577 - sense intronic lncRNA gene predicted gene 44699
Tssr71592 7 28925414 to 28925418 4 - TSS region transcription start site region 71592
Gm38978 7 28927421 to 28932124 4703 + lncRNA gene predicted gene, 38978
Tssr65582 7 28931715 to 28931717 2 + TSS region transcription start site region 65582
Tssr71593 7 28948806 to 28948818 12 - TSS region transcription start site region 71593
Tssr71594 7 28949653 to 28949660 7 - TSS region transcription start site region 71594
Tssr71595 7 28949670 to 28949679 9 - TSS region transcription start site region 71595
Tssr71596 7 28958178 to 28958182 4 - TSS region transcription start site region 71596
Cpgi18727 7 28961667 to 28963048 1381 CpG island CpG island 18727
Tssr71597 7 28962236 to 28962247 11 - TSS region transcription start site region 71597
Tssr71598 7 28962265 to 28962310 45 - TSS region transcription start site region 71598
Tssr71599 7 28962326 to 28962337 11 - TSS region transcription start site region 71599
Tssr2176 7 28962512 to 28962533 21 + TSS region transcription start site region 2176
Eif3k 7 28971372 to 28981864 10492 - protein coding gene eukaryotic translation initiation factor 3, subunit K
Tssr65583 7 28972605 to 28972633 28 + TSS region transcription start site region 65583
Tssr71600 7 28977909 to 28977950 41 - TSS region transcription start site region 71600
Cpgi18728 7 28981482 to 28982421 939 CpG island CpG island 18728
Tssr71601 7 28981787 to 28981821 34 - TSS region transcription start site region 71601
Map4k1 7 28982050 to 29003279 21229 + protein coding gene mitogen-activated protein kinase kinase kinase kinase 1
Tssr65584 7 28982832 to 28982892 60 + TSS region transcription start site region 65584
Tssr65585 7 28982910 to 28982921 11 + TSS region transcription start site region 65585
Tssr65586 7 28984729 to 28984730 1 + TSS region transcription start site region 65586
Tssr65587 7 29000784 to 29000822 38 + TSS region transcription start site region 65587
Tssr65588 7 29000823 to 29000837 14 + TSS region transcription start site region 65588
Cpgi18729 7 29000848 to 29001542 694 CpG island CpG island 18729
Tssr65589 7 29001515 to 29001532 17 + TSS region transcription start site region 65589
Tssr65590 7 29001534 to 29001552 18 + TSS region transcription start site region 65590
Tssr65591 7 29001566 to 29001591 25 + TSS region transcription start site region 65591
Tssr65592 7 29001598 to 29001625 27 + TSS region transcription start site region 65592
Ryr1 7 29003344 to 29125179 121835 - protein coding gene ryanodine receptor 1, skeletal muscle
Tssr71602 7 29006144 to 29006193 49 - TSS region transcription start site region 71602
Tssr71603 7 29007881 to 29007923 42 - TSS region transcription start site region 71603
Tssr71604 7 29008770 to 29008817 47 - TSS region transcription start site region 71604
Cpgi18730 7 29019369 to 29020594 1225 CpG island CpG island 18730
Tssr71605 7 29019975 to 29020036 61 - TSS region transcription start site region 71605
Cpgi18731 7 29023981 to 29024294 313 CpG island CpG island 18731
Gm38979 7 29029575 to 29030065 490 + antisense lncRNA gene predicted gene, 38979
Cpgi18732 7 29040295 to 29040701 406 CpG island CpG island 18732
Tssr71606 7 29042258 to 29042269 11 - TSS region transcription start site region 71606
Tssr71607 7 29042308 to 29042320 12 - TSS region transcription start site region 71607
Tssr65593 7 29043593 to 29043680 87 + TSS region transcription start site region 65593
Gm44408 7 29045628 to 29045693 65 + miRNA gene predicted gene, 44408
Cpgi18733 7 29052609 to 29053261 652 CpG island CpG island 18733
Cpgi18734 7 29061624 to 29061861 237 CpG island CpG island 18734
Cpgi18735 7 29064315 to 29064741 426 CpG island CpG island 18735
Cpgi18736 7 29071307 to 29072058 751 CpG island CpG island 18736
Tssr65594 7 29071597 to 29071613 16 + TSS region transcription start site region 65594
Gm26604 7 29071658 to 29079911 8253 + antisense lncRNA gene predicted gene, 26604
Mir1963 7 29083636 to 29083694 58 - miRNA gene microRNA 1963