Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 7:28396706-28697105

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89 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Paf1 7 28392996 to 28399383 6387 + protein coding gene Paf1, RNA polymerase II complex component
Samd4b 7 28399522 to 28436191 36669 - protein coding gene sterile alpha motif domain containing 4B
Tssr71533 7 28401101 to 28401146 45 - TSS region transcription start site region 71533
Cpgi18703 7 28435620 to 28437206 1586 CpG island CpG island 18703
Tssr65473 7 28436089 to 28436098 9 + TSS region transcription start site region 65473
Tssr65474 7 28436124 to 28436133 9 + TSS region transcription start site region 65474
Tssr71534 7 28436234 to 28436245 11 - TSS region transcription start site region 71534
Tssr71535 7 28436274 to 28436340 66 - TSS region transcription start site region 71535
Tssr65475 7 28436363 to 28436370 7 + TSS region transcription start site region 65475
1700085B13Rik 7 28436391 to 28436953 562 unclassified gene RIKEN cDNA 1700085B13 gene
Tssr65476 7 28436394 to 28436401 7 + TSS region transcription start site region 65476
Gmfg 7 28437447 to 28448211 10764 + protein coding gene glia maturation factor, gamma
Tssr65477 7 28437447 to 28437486 39 + TSS region transcription start site region 65477
Tssr65478 7 28440931 to 28440945 14 + TSS region transcription start site region 65478
Tssr65479 7 28440946 to 28441018 72 + TSS region transcription start site region 65479
Tssr65480 7 28441026 to 28441035 9 + TSS region transcription start site region 65480
Tssr2167 7 28441141 to 28441156 15 + TSS region transcription start site region 2167
Tssr2168 7 28442739 to 28442745 6 - TSS region transcription start site region 2168
Tssr2169 7 28442870 to 28442908 38 - TSS region transcription start site region 2169
Tssr65481 7 28443077 to 28443124 47 + TSS region transcription start site region 65481
Tssr65482 7 28443953 to 28443962 9 + TSS region transcription start site region 65482
Tssr65483 7 28444780 to 28444850 70 + TSS region transcription start site region 65483
Tssr65484 7 28444939 to 28444969 30 + TSS region transcription start site region 65484
Cpgi18704 7 28451421 to 28452835 1414 CpG island CpG island 18704
Tssr65485 7 28451943 to 28451989 46 + TSS region transcription start site region 65485
Lrfn1 7 28451985 to 28468242 16257 + protein coding gene leucine rich repeat and fibronectin type III domain containing 1
Cpgi18705 7 28458665 to 28459997 1332 CpG island CpG island 18705
Cpgi18706 7 28466563 to 28467957 1394 CpG island CpG island 18706
Tssr65486 7 28467899 to 28467902 3 + TSS region transcription start site region 65486
Gm6518 7 28477327 to 28477852 525 - pseudogene predicted gene 6518
Cpgi18707 7 28490783 to 28491123 340 CpG island CpG island 18707
1700028B04Rik 7 28496941 to 28497492 551 + pseudogene RIKEN cDNA 1700028B04 gene
Cpgi18708 7 28497090 to 28497359 269 CpG island CpG island 18708
Ifnl2 7 28508836 to 28510455 1619 - protein coding gene interferon lambda 2
Ifnl3 7 28522836 to 28524322 1486 + protein coding gene interferon lambda 3
Tssr71536 7 28528078 to 28528087 9 - TSS region transcription start site region 71536
Gm19880 7 28534772 to 28535089 317 + pseudogene predicted gene, 19880
Tssr65487 7 28540718 to 28540728 10 + TSS region transcription start site region 65487
Tssr2170 7 28540819 to 28540833 14 + TSS region transcription start site region 2170
Tssr65488 7 28540863 to 28540886 23 + TSS region transcription start site region 65488
Sycn 7 28540885 to 28542209 1324 + protein coding gene syncollin
Tssr65489 7 28540894 to 28540906 12 + TSS region transcription start site region 65489
Tssr2171 7 28541003 to 28541021 18 + TSS region transcription start site region 2171
Nccrp1 7 28543596 to 28547254 3658 - protein coding gene non-specific cytotoxic cell receptor protein 1 homolog (zebrafish)
Tssr65490 7 28543927 to 28543944 17 + TSS region transcription start site region 65490
Tssr65491 7 28543982 to 28544013 31 + TSS region transcription start site region 65491
Tssr71537 7 28543982 to 28544001 19 - TSS region transcription start site region 71537
Tssr71538 7 28544038 to 28544062 24 - TSS region transcription start site region 71538
Cpgi18709 7 28544101 to 28544685 584 CpG island CpG island 18709
Tssr71539 7 28544129 to 28544141 12 - TSS region transcription start site region 71539
Tssr71540 7 28544228 to 28544240 12 - TSS region transcription start site region 71540
Tssr71541 7 28544441 to 28544452 11 - TSS region transcription start site region 71541
Cpgi18710 7 28546706 to 28547105 399 CpG island CpG island 18710
Tssr71542 7 28547043 to 28547087 44 - TSS region transcription start site region 71542
Tssr71543 7 28547109 to 28547120 11 - TSS region transcription start site region 71543
Gm38977 7 28547766 to 28550229 2463 + lncRNA gene predicted gene, 38977
Pak4 7 28558819 to 28598184 39365 - protein coding gene p21 (RAC1) activated kinase 4
Mir7049 7 28560925 to 28560984 59 - miRNA gene microRNA 7049
Tssr71544 7 28561044 to 28561054 10 - TSS region transcription start site region 71544
Tssr71545 7 28561101 to 28561112 11 - TSS region transcription start site region 71545
Tssr71546 7 28561683 to 28561694 11 - TSS region transcription start site region 71546
Cpgi18711 7 28562511 to 28562727 216 CpG island CpG island 18711
Tssr71547 7 28576656 to 28576689 33 - TSS region transcription start site region 71547
Tssr65492 7 28597189 to 28597196 7 + TSS region transcription start site region 65492
Cpgi18712 7 28597756 to 28598434 678 CpG island CpG island 18712
Tssr71548 7 28598140 to 28598176 36 - TSS region transcription start site region 71548
Acp7 7 28607634 to 28631332 23698 - protein coding gene acid phosphatase 7, tartrate resistant
Cpgi18713 7 28616998 to 28617268 270 CpG island CpG island 18713
Gm44618 7 28629248 to 28681936 52688 + lincRNA gene predicted gene 44618
Tssr71549 7 28629694 to 28629713 19 - TSS region transcription start site region 71549
Tssr71550 7 28629722 to 28629741 19 - TSS region transcription start site region 71550
Tssr71551 7 28629752 to 28629763 11 - TSS region transcription start site region 71551
Tssr71552 7 28629792 to 28629802 10 - TSS region transcription start site region 71552
Tssr65493 7 28629921 to 28629929 8 + TSS region transcription start site region 65493
Cpgi18714 7 28630257 to 28630913 656 CpG island CpG island 18714
Tssr71553 7 28630501 to 28630512 11 - TSS region transcription start site region 71553
Tssr71554 7 28630897 to 28630920 23 - TSS region transcription start site region 71554
Tssr71555 7 28631586 to 28631594 8 - TSS region transcription start site region 71555
Gm44617 7 28640443 to 28645671 5228 + unclassified non-coding RNA gene predicted gene 44617
Tssr71556 7 28646771 to 28646780 9 - TSS region transcription start site region 71556
Tssr65494 7 28692816 to 28692834 18 + TSS region transcription start site region 65494
Fbxo27 7 28692849 to 28699338 6489 + protein coding gene F-box protein 27
Tssr65495 7 28692855 to 28692870 15 + TSS region transcription start site region 65495
Tssr65496 7 28693003 to 28693010 7 + TSS region transcription start site region 65496
Tssr65497 7 28693012 to 28693021 9 + TSS region transcription start site region 65497
Tssr65498 7 28693032 to 28693043 11 + TSS region transcription start site region 65498
Cpgi18715 7 28693059 to 28693751 692 CpG island CpG island 18715
Tssr65499 7 28693997 to 28694012 15 + TSS region transcription start site region 65499
Tssr71557 7 28695255 to 28695272 17 - TSS region transcription start site region 71557